Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 4.8e-257 890.6 427 100.0
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 4.4e-226 787.7 437 87.9
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.4e-224 782.7 436 86.5
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.5e-221 772.7 446 83.6
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 4.6e-207 724.5 405 84.9
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 6.6e-206 720.7 405 84.2
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 8.7e-206 720.3 405 84.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.1e-205 719.9 405 83.5
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 5.6e-205 717.6 404 83.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.7e-201 706.1 405 83.0
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.9e-201 705.3 388 85.3
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 8.7e-198 693.7 405 80.2
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 8.7e-198 693.7 405 80.2
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 3.5e-183 645.2 399 74.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.8e-180 635.6 403 72.0
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 3.4e-178 628.6 405 70.6
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 3.2e-176 622.1 405 69.9
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.2e-175 620.2 465 62.6
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.1e-173 613.6 405 70.9
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.5e-173 613.2 419 69.9
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 9.7e-173 610.5 406 70.9
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 8.2e-172 607.4 405 70.9
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 4.5e-170 601.7 396 71.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 7.7e-170 600.9 402 67.7
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 2.9e-169 599.0 336 80.4
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.1e-168 597.0 405 68.1
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.5e-168 595.9 402 68.4
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.5e-168 595.9 405 69.6
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.5e-168 595.9 405 69.6
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 5.5e-168 594.7 402 66.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 5.5e-168 594.7 403 69.2
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.0e-166 590.5 390 69.2
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.4e-166 590.1 387 70.3
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 6.7e-166 587.8 405 66.9
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 6.7e-166 587.8 387 70.3
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 3.3e-165 585.5 405 66.7
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 3.3e-165 585.5 402 66.2
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 3.7e-164 582.0 389 67.9
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.8e-164 581.6 405 66.2
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 6.3e-164 581.3 405 66.4
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.4e-163 580.1 402 65.4
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 5.3e-163 578.2 405 66.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.3e-163 578.2 423 65.2
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 5.3e-163 578.2 401 66.3
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 9.1e-163 577.4 394 71.6
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.0e-161 573.9 405 65.9
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.9e-161 572.4 404 67.3
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.8e-161 572.0 408 65.2
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 3.8e-161 572.0 406 66.0
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 3.8e-161 572.0 389 69.2
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 8.5e-161 570.9 404 66.3
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 3.2e-160 568.9 405 65.2
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.2e-160 568.9 418 63.9
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 5.5e-160 568.2 402 65.9
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.1e-159 566.2 406 64.8
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 2.7e-159 565.8 359 71.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.7e-159 565.8 405 66.4
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 6.1e-159 564.7 405 64.9
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 6.1e-159 564.7 404 65.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.0e-158 562.4 401 63.3
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 2.6e-157 559.3 405 66.2
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 4.4e-157 558.5 425 63.8
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 7.4e-157 557.8 402 64.4
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.4e-157 557.8 402 64.7
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.3e-156 557.0 408 64.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 2.2e-156 556.2 402 64.7
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.4e-155 552.7 405 65.2
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 7.0e-155 551.2 406 65.8
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.5e-154 550.1 426 62.7
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 5.9e-154 548.1 418 62.4
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 7.7e-154 547.7 397 64.0
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 3.2e-152 542.3 384 65.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 2.1e-151 539.7 444 58.3
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.0e-150 537.3 384 63.8
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.8e-150 536.6 405 64.2
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 5.3e-147 525.0 384 62.0
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.6e-146 523.5 394 63.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 5.9e-146 521.5 387 64.3
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 8.5e-145 517.7 439 57.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 7.2e-144 514.6 368 65.5
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 3.0e-142 509.2 322 71.1
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.2e-142 508.4 393 61.3
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.6e-141 506.1 426 59.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.4e-139 500.4 420 60.7
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 7.0e-139 498.0 369 62.9
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.5e-138 495.4 394 59.9
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.9e-136 490.0 405 61.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 8.8e-134 481.1 306 70.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 5.7e-133 478.4 329 66.6
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.7e-132 475.7 312 70.5
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 3.8e-129 465.7 367 61.0
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.8e-127 459.5 465 53.3
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.2e-122 444.1 330 65.2
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.6e-120 435.3 268 72.8
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 4.7e-119 432.2 331 60.4
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 9.8e-117 424.5 332 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.3e-113 414.1 334 57.5
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.5e-112 410.6 286 69.2
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.2e-110 402.1 305 58.7
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.2e-107 391.3 300 61.3
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.2e-106 391.0 349 57.9
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 3.7e-100 369.4 250 68.4
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 3.7e-100 369.4 250 68.4
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.8e-87 326.6 332 49.4
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 8.1e-87 325.1 294 57.1
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 2.6e-85 320.1 313 49.8
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.0e-81 308.1 340 46.5
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.3e-80 302.8 174 77.0
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 3.5e-74 283.1 155 81.9
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.8e-73 280.8 155 81.3
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.8e-71 273.5 154 81.8
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 6.2e-71 272.3 154 81.2
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.4e-67 261.2 352 40.3
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.5e-64 251.1 351 38.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 8.2e-63 245.4 232 50.9
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 3.1e-62 243.4 239 49.8
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.7e-44 184.5 103 79.6
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 3.6e-42 176.8 106 75.5
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 6.1e-42 176.0 103 78.6
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.9e-42 175.6 138 61.6
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.3e-38 162.9 92 75.0
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.0e-36 158.7 311 34.7
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.3e-31 141.7 92 69.6
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 4.1e-30 136.7 73 80.8
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.2e-27 127.1 125 52.0
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.0e-26 122.5 331 29.3
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.1e-19 102.1 55 72.7
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 1.8e-14 84.7 102 48.0
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.1e-14 83.6 98 39.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 5.5e-11 73.2 103 41.7


User provided reference genes

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