Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 2420.2 1257 100.0
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1958.7 1302 80.6
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1935.2 1259 81.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1901.3 1259 80.0
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1629.8 1271 71.1
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1595.1 1279 69.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1582.0 1305 66.5
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1537.7 1350 64.8
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1528.1 1314 66.1
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1516.9 1257 65.9
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1458.7 1424 59.9
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1311.6 1266 58.1
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1297.7 1140 62.1
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 0.0e+00 1234.2 1289 57.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1223.4 1269 55.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1219.1 1137 59.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1209.9 1306 53.4
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1105 59.5
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1203.7 1274 53.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1199.9 1301 52.8
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1198.0 1295 53.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1192.9 1283 54.3
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1186.8 1282 54.6
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1180.6 1161 56.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1179.9 1267 53.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1175.2 1111 58.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1174.8 1283 53.9
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1174.8 1283 53.9
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1164.1 960 62.9
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1158.3 1279 52.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1156.4 1285 52.4
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1302 51.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1154.0 1306 52.5
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1151.7 1271 53.0
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1147.1 1132 56.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1133.6 1266 52.4
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1131.7 1272 52.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1126.7 1321 50.6
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1282 51.6
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1122.8 1287 51.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1115.9 1179 54.8
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1113.6 1271 51.7
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1108.6 1297 49.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1108.2 1474 47.1
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1104.4 1178 54.6
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1101 55.8
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1089.7 1107 54.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1087.0 1291 50.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1079.7 1266 50.7
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1077.0 1364 49.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1075.8 1102 55.6
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 8.6e-312 1074.3 1269 50.0
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.7e-311 1070.8 1322 49.8
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 5.0e-310 1068.1 1273 49.4
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.4e-309 1066.6 1288 47.7
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 4.2e-309 1065.1 1102 53.7
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 3.6e-308 1062.0 1111 54.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 6.1e-308 1061.2 1264 50.2
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 7.9e-308 1060.8 1130 52.6
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.8e-307 1059.7 1356 48.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.6e-306 1055.8 1104 53.7
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 7.4e-306 1054.3 1266 48.4
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.3e-305 1053.5 1069 54.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 4.5e-303 1045.0 1265 49.4
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.8e-302 1042.0 1129 51.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1137 51.5
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1137 51.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 3.0e-299 1032.3 1138 51.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.5e-298 1030.0 1140 51.5
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 3.3e-298 1028.9 1139 51.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.8e-296 1023.1 1326 47.3
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 2.4e-296 1022.7 1026 56.2
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 2.0e-295 1019.6 1271 48.2
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 4.5e-295 1018.5 1328 47.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.0e-294 1017.3 1266 49.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.7e-294 1016.5 1293 48.0
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.7e-292 1009.2 1338 46.0
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.4e-290 1001.9 1204 49.3
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 6.3e-289 998.0 1326 46.5
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 8.3e-289 997.7 1316 46.4
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.4e-288 996.9 1268 48.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 7.0e-288 994.6 1153 49.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.0e-287 993.0 1460 43.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.8e-284 982.6 957 56.6
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.3e-283 979.5 1186 49.2
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.6e-282 976.1 986 55.5
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 2.3e-278 963.0 951 55.1
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 8.6e-278 961.1 1115 50.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.8e-275 951.4 1176 49.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.2e-272 942.6 1338 45.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 9.2e-256 887.9 1144 50.0
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.2e-250 870.9 1190 45.6
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.9e-249 866.3 1153 46.1
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 2.5e-245 853.2 1243 43.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 4.7e-244 849.0 1190 44.2
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 4.7e-244 849.0 1335 41.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 6.0e-239 832.0 1282 41.7
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.1e-227 794.7 1182 42.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.2e-216 756.1 968 47.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 5.0e-209 732.6 1096 43.4
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.4e-208 731.1 550 66.9
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 7.9e-207 725.3 958 46.8
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.3e-204 718.0 514 69.8
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 6.5e-201 705.7 1271 38.4
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 5.9e-186 656.0 523 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.2e-176 623.6 980 38.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 8.9e-166 589.0 1158 34.4
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.6e-154 551.6 1198 34.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.7e-137 495.0 686 43.1
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.3e-111 409.1 954 31.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.2e-91 340.9 727 37.1
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.8e-87 327.4 246 66.7
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 4.4e-80 304.3 302 57.6
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 5.2e-57 227.6 178 66.3
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.3e-52 213.0 170 65.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-51 209.1 267 42.7
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 7.8e-45 187.2 615 27.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 8.6e-44 183.7 135 68.1
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 6.8e-41 174.1 230 53.9
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 2.9e-39 168.7 151 62.3
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 6.8e-33 147.5 118 66.1
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.8e-32 143.7 105 65.7
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.1e-29 136.0 108 67.6
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 2.3e-28 132.5 226 35.8
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.3e-27 128.3 124 54.8
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.8e-26 125.6 84 66.7
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 5.8e-24 117.9 72 77.8
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 5.8e-24 117.9 140 50.0
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 9.2e-22 110.5 117 51.3
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 9.2e-22 110.5 121 48.8
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-19 102.8 120 47.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-18 100.1 125 46.4
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-18 99.4 406 27.1
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.4e-14 85.9 84 57.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.1e-11 77.0 93 43.0
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.6e-11 74.7 89 41.6
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 9.6e-11 73.9 46 73.9
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.6e-10 72.0 40 85.0
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.9e-08 63.9 64 51.6


User provided reference genes

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