Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 0.0e+00 1276.5 638 100.0
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 0.0e+00 1134.8 642 88.3
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 0.0e+00 1130.2 643 88.3
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 3.1e-300 1034.6 633 82.9
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 5.3e-300 1033.9 661 80.3
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 9.4e-281 969.9 641 78.5
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-259 899.4 655 70.5
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 7.2e-257 890.6 619 72.9
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 7.2e-257 890.6 665 69.8
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.6e-256 888.3 657 69.9
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.0e-254 882.5 650 69.8
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 3.7e-253 878.2 677 67.2
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.4e-252 876.3 645 69.0
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 3.5e-251 871.7 664 67.2
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 4.5e-251 871.3 655 69.2
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 8.6e-250 867.1 650 68.2
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.1e-249 866.7 649 68.3
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.5e-249 866.3 650 68.2
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 7.2e-249 864.0 650 67.8
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.6e-248 862.8 651 68.4
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.0e-247 860.1 660 66.1
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.4e-244 849.7 705 64.0
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.8e-244 849.4 643 67.3
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 5.4e-244 847.8 657 66.5
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.9e-243 844.3 665 66.6
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 4.3e-241 838.2 688 63.8
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 9.5e-241 837.0 648 66.7
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 2.8e-240 835.5 627 68.7
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 7.5e-238 827.4 647 66.8
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.6e-232 809.7 664 63.4
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.8e-231 806.2 611 68.1
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 4.9e-229 798.1 620 68.5
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-228 797.0 646 64.7
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 4.1e-228 795.0 650 61.7
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 2.5e-225 785.8 740 58.2
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.1e-223 780.4 656 61.4
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 3.1e-223 778.9 659 62.1
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 7.5e-222 774.2 689 59.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 2.2e-221 772.7 652 63.7
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.9e-221 771.5 483 81.6
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.1e-220 770.4 668 60.6
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 9.2e-212 740.7 453 83.2
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.3e-210 736.9 764 56.4
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 3.9e-210 735.3 540 69.6
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.9e-202 708.8 664 59.3
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.1e-199 699.1 550 64.4
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.2e-198 697.2 674 55.9
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 8.4e-197 691.0 421 82.4
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.1e-195 686.4 636 58.5
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.7e-195 686.0 668 57.6
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.8e-190 668.3 664 58.1
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-189 666.8 688 56.2
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.2e-189 666.4 688 56.2
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 5.5e-188 661.8 550 63.6
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.2e-187 660.6 651 56.5
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 6.0e-187 658.3 655 56.5
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.2e-181 639.8 521 63.5
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.1e-180 634.8 522 63.4
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 9.3e-180 634.4 484 69.8
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.0e-178 629.4 537 61.3
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.9e-175 618.2 714 51.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.5e-174 617.1 697 52.2
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 8.5e-173 611.3 650 48.8
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.5e-164 583.2 452 66.8
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 2.1e-163 580.1 452 67.3
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.1e-163 580.1 482 66.2
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 4.1e-159 565.8 330 80.9
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 2.9e-157 559.7 490 60.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 5.0e-157 558.9 539 57.3
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.8e-154 550.4 455 63.3
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 3.0e-154 549.7 420 68.6
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.7e-152 542.7 397 72.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.9e-149 533.1 509 58.7
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.2e-140 503.1 464 61.2
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 7.2e-140 501.9 325 76.0
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-138 498.0 464 61.2
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.6e-134 484.2 245 94.3
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.5e-129 467.6 642 43.3
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 9.8e-129 464.9 544 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 6.3e-128 462.2 657 42.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.3e-122 443.7 635 41.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.5e-121 441.0 439 55.8
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-97 361.7 259 71.0
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.5e-78 297.0 169 82.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.2e-75 286.2 265 62.3
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 4.0e-74 283.5 174 80.5
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-73 280.8 283 56.2
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.0e-69 267.3 328 45.7
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.6e-68 263.1 152 82.9
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 8.2e-67 259.2 132 93.9
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 5.3e-66 256.5 175 71.4
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 6.9e-66 256.1 173 70.5
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 7.6e-65 252.7 173 68.8
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 3.8e-64 250.4 173 69.4
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 4.9e-64 250.0 173 74.0
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 9.3e-63 245.7 173 68.2
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.1e-58 230.7 225 52.9
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 3.4e-57 227.3 115 93.0
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.2e-56 224.6 173 61.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.1e-55 222.2 176 60.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 4.2e-55 220.3 590 30.3
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.4e-53 215.3 173 58.4
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 2.3e-53 214.5 173 57.8
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 8.8e-53 212.6 106 94.3
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.8e-53 212.6 178 59.6
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.1e-52 212.2 173 56.6
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.7e-51 208.4 100 98.0
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.7e-43 181.8 244 45.1
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 7.0e-42 176.4 173 51.4
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 2.0e-41 174.9 101 83.2
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 3.5e-41 174.1 133 64.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 1.3e-40 172.2 133 63.9
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.8e-40 170.6 870 23.3
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 4.7e-38 163.7 130 60.0
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 5.2e-37 160.2 130 60.8
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-36 158.3 129 59.7
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-36 157.9 90 81.1
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 3.6e-30 137.5 114 64.9
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 5.3e-26 123.6 194 46.9
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.7e-25 121.3 85 68.2
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.5e-25 120.6 79 73.4
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 5.9e-25 120.2 78 75.6
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 5.9e-25 120.2 184 33.7
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 8.5e-24 116.3 65 83.1
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 4.0e-21 107.5 82 63.4
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 9.1e-18 96.3 57 78.9
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 6.1e-14 83.6 56 67.9
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-13 82.4 51 68.6
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 2.0e-12 78.6 43 86.0
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 5.7e-12 77.0 60 61.7
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 3.2e-10 71.2 207 31.4
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 5.9e-09 67.0 207 27.5
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 2.3e-08 65.1 198 26.8
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 2.3e-08 65.1 264 24.2
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 5.0e-08 63.9 177 24.9
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 5.0e-08 63.9 200 27.0
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 8.6e-08 63.2 199 27.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.1e-07 62.8 251 24.3
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.5e-07 62.4 202 25.2
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 1.5e-07 62.4 230 24.3
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.9e-07 62.0 198 26.3
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 3.3e-07 61.2 204 27.0
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 3.3e-07 61.2 204 27.0
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 5.6e-07 60.5 39 76.9
MSTRG.25865 Avicennia marina HOM05D000836 ORTHO05D000709 5.6e-07 60.5 223 24.7
Dinv01308 Davidia involucrata HOM05D002332 ORTHO05D002509 5.6e-07 60.5 176 26.7
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 5.6e-07 60.5 218 23.9
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 5.6e-07 60.5 373 20.6
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 9.5e-07 59.7 56 55.4
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 9.5e-07 59.7 218 23.9
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 1.2e-06 59.3 176 23.3
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.2e-06 59.3 176 23.9
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.2e-06 59.3 176 23.9
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 1.2e-06 59.3 282 20.6
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 1.2e-06 59.3 203 25.1
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 1.6e-06 58.9 221 24.0
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 1.6e-06 58.9 227 23.3
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 1.6e-06 58.9 234 23.9
Aa31LG10G9730 Aethionema arabicum HOM05D002332 ORTHO05D002509 2.1e-06 58.5 226 22.1
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 2.1e-06 58.5 218 22.9
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 2.1e-06 58.5 176 24.4
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 2.1e-06 58.5 332 21.4
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.8e-06 58.2 299 23.1
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 2.8e-06 58.2 221 22.2
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 2.8e-06 58.2 283 22.3
Dinv36800 Davidia involucrata HOM05D005151 ORTHO05D006322 2.8e-06 58.2 218 22.0
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.8e-06 58.2 282 23.0
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.8e-06 58.2 199 24.6
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 3.6e-06 57.8 349 20.1
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 3.6e-06 57.8 206 23.8
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 4.7e-06 57.4 221 21.7
CiPaw.11G009200 Carya illinoinensis HOM05D002332 ORTHO05D002509 4.7e-06 57.4 201 26.4
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 4.7e-06 57.4 218 22.5
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 6.1e-06 57.0 218 22.5
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 6.1e-06 57.0 218 22.5
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 6.1e-06 57.0 221 23.1
Phvul.008G025800 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 6.1e-06 57.0 176 23.3
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 6.1e-06 57.0 200 21.5
VMungo1383G1987 Vigna mungo HOM05D002332 ORTHO05D002509 8.0e-06 56.6 171 24.0


User provided reference genes

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