Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.3e-157 559.7 291 100.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 4.3e-140 501.5 290 86.9
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.0e-120 437.2 287 77.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 6.7e-109 397.9 288 68.4
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 9.7e-108 394.0 287 71.1
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.2e-103 378.6 294 67.7
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.2e-102 377.1 294 67.3
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.6e-97 359.4 330 59.1
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 3.5e-89 332.4 254 65.4
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.3e-88 330.5 293 61.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.0e-85 319.3 289 60.2
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 4.0e-85 318.9 292 55.1
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 6.7e-85 318.2 295 55.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.0e-84 316.6 294 58.2
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 4.8e-83 312.0 294 56.1
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.7e-81 306.2 291 54.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 6.5e-80 301.6 290 56.9
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.5e-79 300.4 293 51.9
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 2.1e-78 296.6 301 50.5
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.7e-78 295.4 294 51.4
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.0e-77 294.3 299 50.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.4e-77 293.9 300 51.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 3.0e-77 292.7 286 54.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.7e-75 285.8 264 53.8
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 4.8e-75 285.4 291 55.0
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.4e-74 283.1 290 56.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-74 283.1 290 56.2
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-73 279.6 290 55.9
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.7e-73 278.1 290 55.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.0e-72 277.7 212 71.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.3e-72 277.3 298 50.0
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.7e-72 276.9 299 50.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.7e-72 276.9 292 51.7
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.3e-72 276.6 297 51.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 8.6e-72 274.6 296 49.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-71 274.2 290 54.8
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.5e-71 273.9 298 50.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.2e-71 272.3 291 49.5
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.8e-70 269.6 293 49.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.6e-70 269.2 293 50.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.1e-70 268.5 292 49.3
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.8e-69 266.9 292 49.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 4.0e-69 265.8 289 50.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.2e-69 265.4 294 49.7
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.6e-68 263.1 322 49.4
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.4e-68 262.7 289 49.5
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 5.7e-68 261.9 297 48.1
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.7e-68 261.9 288 50.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 7.5e-68 261.5 286 50.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.7e-67 259.2 291 47.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 6.3e-67 258.5 303 47.2
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.4e-66 257.3 290 46.6
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.8e-66 256.9 268 49.6
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 5.4e-66 255.4 297 49.2
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 9.2e-66 254.6 267 50.9
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.2e-65 254.2 289 47.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.0e-64 251.1 286 47.6
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.1e-63 247.7 265 49.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.1e-63 247.7 290 48.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.5e-63 247.3 286 46.2
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.9e-63 246.9 290 44.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 3.3e-63 246.1 270 49.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 9.5e-63 244.6 285 47.4
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 6.8e-61 238.4 286 43.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.0e-60 236.9 212 56.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.3e-59 234.2 291 43.3
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.1e-58 231.1 259 48.6
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.4e-58 230.7 293 43.0
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.3e-56 223.4 211 52.6
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 3.0e-56 223.0 203 54.2
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.8e-53 213.8 290 41.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 2.3e-53 213.4 296 40.9
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.5e-52 210.7 283 43.1
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.3e-51 207.6 282 38.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 9.2e-50 201.4 257 45.1
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-48 197.6 239 46.0
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.7e-48 197.2 277 40.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.3e-48 196.8 257 43.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.1e-47 194.5 264 41.7
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.1e-46 190.3 282 39.7
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 2.8e-46 189.9 282 39.7
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.8e-46 189.9 290 39.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 4.7e-46 189.1 325 36.9
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.4e-45 187.6 166 59.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.0e-45 186.0 208 46.2
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.6e-44 183.3 283 40.3
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 5.8e-44 182.2 204 47.5
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.4e-42 176.8 196 46.4
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 3.2e-42 176.4 288 37.2
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-41 174.1 227 40.5
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.1e-40 169.1 266 39.1
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.6e-38 162.9 231 43.7
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.2e-36 157.9 196 44.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.6e-33 147.5 97 75.3
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 3.5e-33 146.4 206 46.1
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 4.6e-33 146.0 198 42.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 6.0e-33 145.6 245 36.3
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.0e-33 145.6 168 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.0e-32 144.8 268 32.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.1e-31 141.4 225 38.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 3.3e-31 139.8 233 37.8
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 7.3e-31 138.7 203 42.4
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 9.6e-31 138.3 126 57.9
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 4.8e-30 136.0 225 37.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.1e-29 134.8 221 37.1
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.4e-29 133.7 140 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.0e-29 132.9 257 31.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.9e-27 126.7 256 30.9
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.1e-26 124.8 200 37.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.6e-25 119.4 112 55.4
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.3e-22 111.3 110 52.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 8.1e-22 108.6 170 37.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.1e-21 106.7 126 47.6
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 4.0e-21 106.3 260 28.5
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 6.9e-21 105.5 104 50.0
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.9e-21 105.5 81 64.2
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.9e-21 105.5 81 64.2
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.7e-19 100.9 239 28.0
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 2.2e-19 100.5 79 64.6
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-18 97.4 62 74.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 5.4e-18 95.9 62 72.6
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 7.1e-18 95.5 112 42.9
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.1e-18 95.5 62 74.2
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.4e-15 85.5 61 62.3
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.7e-11 74.3 191 29.3
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.9e-11 72.8 94 38.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-10 70.5 51 62.7


User provided reference genes

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