Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.3e-260 902.5 459 100.0
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 4.6e-221 771.2 464 85.6
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 6.9e-217 757.3 462 84.6
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 4.3e-203 711.4 465 77.8
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 8.7e-196 687.2 461 75.5
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 1.3e-194 683.3 459 75.8
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 6.1e-189 664.5 465 73.1
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.0e-179 632.9 467 70.2
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.6e-157 560.1 447 66.2
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 3.0e-148 529.3 402 69.2
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.5e-147 526.9 471 60.3
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.0e-147 526.6 401 69.3
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 1.6e-141 506.9 471 60.3
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 3.4e-139 499.2 462 58.9
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.0e-136 490.0 466 56.2
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 1.7e-135 486.9 468 55.6
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.9e-135 485.7 464 56.5
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 5.0e-135 485.3 460 55.7
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 4.3e-134 482.3 475 55.4
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.8e-133 479.6 470 56.8
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 1.8e-132 476.9 474 55.3
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 2.9e-130 469.5 461 56.0
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.1e-129 465.7 470 53.4
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 6.6e-127 458.4 469 54.8
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.6e-127 458.0 465 54.2
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 2.5e-126 456.4 473 53.1
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 4.3e-126 455.7 469 54.6
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 9.5e-126 454.5 471 52.9
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.2e-125 451.8 469 54.4
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 8.1e-125 451.4 470 53.4
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.1e-125 451.4 458 54.4
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 2.3e-124 449.9 469 54.4
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.2e-123 447.6 469 54.2
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 8.3e-122 441.4 480 50.8
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 1.1e-121 441.0 467 51.8
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 1.1e-121 441.0 465 53.1
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.2e-121 439.5 470 50.9
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 9.2e-121 438.0 458 52.4
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 9.2e-121 438.0 464 51.3
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 4.6e-120 435.6 468 50.6
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 6.0e-120 435.3 470 51.3
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.9e-118 430.3 472 50.0
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.9e-118 430.3 463 50.5
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 7.3e-118 428.3 471 50.5
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 1.2e-117 427.6 456 50.7
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 3.1e-116 422.9 468 50.4
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 8.9e-116 421.4 470 51.9
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 8.9e-116 421.4 464 50.4
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 2.0e-115 420.2 467 49.5
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.8e-115 418.7 430 54.7
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 1.3e-114 417.5 459 51.2
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 2.2e-114 416.8 462 49.1
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 2.9e-114 416.4 468 50.0
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 3.8e-114 416.0 470 50.4
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 3.8e-114 416.0 471 49.5
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.4e-113 414.1 474 50.0
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 1.9e-113 413.7 462 49.1
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 4.1e-113 412.5 427 53.2
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 5.4e-113 412.1 404 55.9
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 7.1e-113 411.8 467 49.7
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 1.2e-112 411.0 406 55.9
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 4.6e-112 409.1 468 49.4
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 7.8e-112 408.3 465 51.0
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.0e-111 407.9 467 48.8
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 2.3e-111 406.8 462 48.7
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.9e-110 403.7 406 54.9
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 2.1e-109 400.2 467 49.9
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 2.1e-109 400.2 467 49.9
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 2.1e-109 400.2 467 49.9
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 2.8e-109 399.8 455 50.1
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 4.7e-109 399.1 455 49.7
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.1e-108 397.9 461 48.2
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 1.8e-108 397.1 463 48.4
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.1e-108 396.4 461 48.4
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 6.9e-108 395.2 361 57.6
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 1.2e-107 394.4 463 47.9
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 3.4e-107 392.9 438 51.4
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 8.4e-106 388.3 451 48.1
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.4e-105 387.5 465 46.2
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 9.0e-100 368.2 408 49.8
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 8.4e-98 361.7 401 51.6
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 1.1e-97 361.3 421 50.4
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.7e-96 356.7 460 43.5
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 5.1e-95 352.4 467 44.5
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.2e-89 332.8 373 50.1
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.5e-78 297.7 598 35.5
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 6.3e-77 292.4 354 49.2
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.7e-74 284.3 462 41.6
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.9e-73 280.8 438 41.3
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 3.2e-73 280.0 233 61.8
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.7e-70 269.2 233 55.4
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.8e-68 264.2 330 49.1
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 7.2e-65 252.3 256 50.8
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 1.6e-56 224.6 264 47.7
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.1e-56 224.2 253 53.0
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 6.1e-56 222.6 536 31.3
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.4e-55 221.5 454 36.3
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 8.8e-47 192.2 144 66.7
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 3.5e-43 180.3 199 54.3
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 7.2e-41 172.6 242 45.0
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.6e-40 171.4 474 27.8
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 1.6e-40 171.4 451 33.5
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.5e-38 164.9 179 52.0
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 9.8e-38 162.2 314 35.0
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 2.3e-34 151.0 524 26.3
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 1.5e-33 148.3 460 28.5
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 3.3e-33 147.1 119 65.5
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 2.0e-30 137.9 447 29.5
VMungo1215G2423 Vigna mungo HOM05D006594 ORTHO05D008383 4.3e-25 120.2 180 44.4
VMungo0331G1316 Vigna mungo HOM05D006594 ORTHO05D008383 6.4e-21 106.3 208 37.0
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 1.2e-19 102.1 134 46.3
VMungo1215G0888 Vigna mungo HOM05D006594 ORTHO05D008383 4.3e-17 93.6 56 78.6
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 8.0e-16 89.4 115 50.4
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 4.0e-15 87.0 150 42.0
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 1.5e-14 85.1 172 36.6
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 2.2e-13 81.3 113 35.4
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.9e-13 80.9 112 49.1
arahy.Tifrunner.gnm1.ann1.0F3SR2 Arachis hypogaea HOM05D006594 ORTHO05D008383 8.1e-08 62.8 51 62.7
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 2.0e-06 58.2 126 26.2


User provided reference genes

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