Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 0.0e+00 1330.9 676 100.0
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 9.5e-308 1059.7 675 82.4
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.5e-263 912.1 700 72.1
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 4.2e-263 911.4 697 71.2
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.5e-191 672.9 688 61.2
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 2.6e-172 609.8 698 56.4
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 8.1e-166 588.2 707 54.2
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 3.9e-160 569.3 709 53.2
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 1.0e-152 544.7 700 51.7
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.2e-150 535.0 748 51.1
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 7.1e-146 521.9 726 50.6
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.8e-144 517.3 755 51.0
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 2.9e-139 500.0 736 48.2
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 9.7e-135 485.0 756 49.1
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 3.2e-130 469.9 739 46.5
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 5.7e-119 432.6 714 46.9
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 5.7e-119 432.6 663 48.0
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 3.1e-109 400.2 691 46.0
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 9.4e-106 388.7 741 42.1
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.4e-103 380.2 756 42.2
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 4.5e-100 369.8 735 41.8
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 7.7e-100 369.0 773 40.8
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 4.3e-98 363.2 756 40.6
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 6.2e-89 332.8 740 39.2
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 1.8e-88 331.3 715 41.3
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.5e-87 328.2 771 39.4
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 7.5e-87 325.9 764 38.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 7.5e-87 325.9 775 39.7
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.7e-86 323.6 745 38.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 4.1e-85 320.1 747 37.5
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.6e-84 318.2 769 38.8
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 4.7e-81 306.6 750 38.3
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.3e-80 304.3 733 38.2
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.5e-79 301.6 724 37.4
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 8.3e-78 295.8 738 38.9
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 3.2e-77 293.9 760 36.2
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.6e-76 291.6 806 37.1
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.0e-75 288.9 746 37.4
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.7e-75 288.1 771 37.2
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.9e-75 287.0 731 38.6
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.1e-74 285.4 728 39.3
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.1e-74 285.4 730 37.7
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.5e-74 285.0 716 36.2
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.3e-74 283.9 731 38.7
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.3e-74 283.9 731 38.7
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 4.3e-74 283.5 775 37.3
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 7.3e-74 282.7 765 36.2
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-73 282.0 728 39.1
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.2e-73 282.0 774 36.4
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 6.8e-72 276.2 722 37.7
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.8e-71 273.1 616 39.9
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 6.4e-70 269.6 811 34.6
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 8.4e-70 269.2 713 37.4
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 4.1e-69 266.9 727 35.5
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.6e-68 265.0 797 34.0
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 6.0e-68 263.1 637 39.4
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.3e-67 261.9 273 60.8
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 3.0e-67 260.8 756 35.7
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 8.6e-67 259.2 723 35.1
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.5e-66 258.5 785 34.6
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 7.3e-66 256.1 720 35.6
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.6e-65 255.0 772 33.9
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 2.1e-65 254.6 785 34.0
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 8.1e-65 252.7 765 36.3
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 1.1e-64 252.3 483 43.3
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.4e-64 251.9 728 35.3
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 5.8e-63 246.5 735 35.1
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 5.8e-63 246.5 732 35.4
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.1e-61 242.3 757 34.9
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.2e-61 240.4 778 34.6
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 5.4e-61 240.0 734 36.0
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 6.0e-60 236.5 820 32.2
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.3e-59 234.6 728 33.1
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.9e-58 231.5 775 32.8
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 4.3e-58 230.3 735 33.3
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 9.6e-58 229.2 787 34.7
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 2.8e-57 227.6 789 33.3
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.1e-56 225.7 754 32.4
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.2e-54 218.0 704 34.8
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 4.2e-53 213.8 741 32.9
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 9.3e-53 212.6 758 32.3
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.1e-52 211.5 772 33.2
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 3.5e-52 210.7 725 33.4
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 6.0e-52 209.9 755 32.1
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 1.3e-51 208.8 471 41.4
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.1e-50 205.7 702 33.8
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.1e-50 205.7 700 32.3
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 5.6e-50 203.4 632 35.6
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.6e-49 201.8 747 32.4
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.1e-48 199.1 704 32.7
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 5.3e-48 196.8 698 34.0
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.3e-46 192.2 738 32.2
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 3.8e-46 190.7 756 30.3
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 8.4e-46 189.5 714 31.8
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-45 189.1 712 32.7
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.9e-45 188.3 705 32.8
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.9e-45 188.3 678 33.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 3.2e-45 187.6 710 31.4
VMungo0720G0588 Vigna mungo HOM05D003765 ORTHO05D004561 4.2e-45 187.2 194 57.7
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.3e-43 182.2 700 32.7
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 2.3e-43 181.4 609 33.2
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.7e-43 179.9 675 32.4
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.5e-42 177.9 748 33.3
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 5.6e-42 176.8 746 32.0
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 7.4e-42 176.4 733 31.2
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.6e-41 175.3 744 32.1
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.1e-40 172.6 752 30.2
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 5.3e-40 170.2 784 30.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.9e-40 169.9 680 30.7
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.2e-39 169.1 720 31.2
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.5e-39 168.7 684 30.4
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 6.5e-38 163.3 730 30.5
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.9e-37 161.8 749 29.5
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 4.2e-37 160.6 721 29.0
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 1.2e-36 159.1 713 29.5
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.6e-36 158.7 706 29.5
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.7e-36 157.9 627 31.7
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 3.5e-36 157.5 618 34.0
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 7.9e-36 156.4 746 27.6
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.0e-35 156.0 720 29.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 5.1e-35 153.7 688 30.5
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.7e-35 153.3 713 29.2
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 5.7e-34 150.2 665 28.9
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 7.4e-34 149.8 666 30.8
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 1.1e-32 146.0 734 28.1
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.1e-32 146.0 704 29.7
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 5.3e-32 143.7 651 28.1
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.7e-30 138.7 679 28.7
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 2.2e-30 138.3 242 40.1
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.2e-28 132.5 722 29.8
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.1e-28 130.2 384 36.2
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 1.8e-27 128.6 480 32.3
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.3e-27 128.3 271 38.0
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 9.7e-26 122.9 459 32.5
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 2.8e-25 121.3 416 33.7
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 4.8e-25 120.6 459 32.2
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 4.1e-24 117.5 393 32.8
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 1.5e-23 115.5 197 44.7
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 2.6e-23 114.8 435 31.5
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 4.5e-23 114.0 109 62.4
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 4.5e-23 114.0 109 62.4
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.5e-22 110.2 265 37.0
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 6.5e-22 110.2 294 35.0
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 8.5e-22 109.8 304 37.2
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 5.5e-21 107.1 417 32.4
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 9.4e-21 106.3 290 37.9
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 8.8e-19 99.8 832 26.0
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 8.8e-19 99.8 367 32.4
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.1e-18 99.4 550 27.5
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-18 99.4 555 29.0
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 1.5e-18 99.0 271 32.1
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 3.3e-18 97.8 272 32.0
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.3e-17 95.9 280 31.1
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 4.8e-17 94.0 395 30.9
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.2e-17 93.2 356 33.1
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-16 92.4 282 31.6
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.8e-16 92.0 395 30.6
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.8e-16 92.0 370 31.4
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.4e-16 91.7 523 30.2
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.5e-15 89.0 432 28.0
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.5e-15 89.0 271 31.7
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.5e-15 89.0 271 31.7
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 5.9e-15 87.0 228 32.9
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 3.8e-14 84.3 490 28.2
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.9e-13 82.0 318 27.4
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 5.5e-13 80.5 236 31.4
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 2.1e-12 78.6 308 27.6
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.7e-11 73.6 397 28.2
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 2.6e-10 71.6 155 36.1
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 2.2e-09 68.6 622 25.2
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.8e-09 68.2 347 30.5
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 1.4e-08 65.9 190 27.9
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 9.1e-08 63.2 691 21.3
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 3.8e-06 57.8 732 21.6


User provided reference genes

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