Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.7e-151 539.3 273 100.0
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.1e-144 515.8 273 96.3
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 3.0e-143 511.9 274 95.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.6e-139 498.8 274 94.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.6e-123 445.7 274 82.8
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.5e-123 444.9 274 83.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.9e-122 442.2 274 82.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.1e-121 440.3 268 82.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.9e-121 439.5 274 81.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 7.2e-121 437.6 274 81.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.7e-120 435.6 272 82.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.7e-120 435.6 268 82.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 7.9e-120 434.1 268 82.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.4e-119 433.3 270 81.5
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.0e-119 432.2 267 82.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.9e-119 431.8 267 82.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.9e-119 431.8 271 81.2
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-119 431.8 271 81.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.1e-119 431.4 274 79.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.5e-118 429.9 274 81.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.5e-118 429.1 274 80.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 3.3e-118 428.7 268 81.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 4.3e-118 428.3 275 78.2
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 5.7e-118 427.9 273 80.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.7e-118 427.9 272 82.0
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.4e-118 427.6 271 80.1
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.3e-117 426.8 268 80.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.2e-117 426.0 271 80.4
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.8e-117 425.6 263 82.5
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.3e-117 424.5 285 77.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.1e-116 423.7 245 89.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.1e-116 422.2 276 79.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.1e-116 421.8 274 77.4
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.1e-116 421.8 277 78.7
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 5.3e-116 421.4 270 81.9
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 6.9e-116 421.0 266 80.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 9.1e-116 420.6 265 80.4
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.2e-115 420.2 246 89.0
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.2e-115 420.2 268 78.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.5e-115 419.9 275 78.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.4e-115 418.7 267 80.9
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.5e-115 418.3 275 78.5
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 7.7e-115 417.5 246 87.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 7.7e-115 417.5 265 80.0
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.7e-114 416.4 275 78.2
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.9e-114 415.6 246 87.4
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.9e-114 415.6 268 78.4
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.0e-114 414.8 257 82.5
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.5e-114 414.5 246 87.4
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.9e-113 412.9 274 78.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.2e-112 410.2 268 78.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.2e-112 410.2 265 80.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.7e-112 409.1 266 77.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-112 408.7 257 82.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.7e-112 408.3 261 79.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 7.9e-112 407.5 266 78.9
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.3e-111 406.0 268 78.0
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.9e-111 405.2 247 87.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.7e-111 404.4 268 78.4
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 8.8e-111 404.1 268 76.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-110 402.5 269 76.6
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.6e-110 402.5 269 77.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.3e-110 402.1 267 77.9
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.3e-110 402.1 257 79.8
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.4e-110 401.7 268 76.5
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 4.4e-110 401.7 269 77.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.4e-110 401.7 269 76.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 7.4e-110 401.0 268 76.5
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 7.4e-110 401.0 266 78.9
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 9.7e-110 400.6 268 77.2
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-109 399.8 268 76.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.2e-109 399.4 255 83.1
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.7e-109 398.7 262 76.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.7e-109 398.7 269 75.5
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.7e-109 398.7 268 76.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.7e-109 398.7 274 74.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.3e-109 397.9 269 75.1
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.3e-109 397.9 326 68.1
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 8.2e-109 397.5 272 76.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.4e-108 396.0 266 74.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.1e-108 395.6 260 76.9
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.1e-108 395.2 259 78.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 7.0e-108 394.4 268 77.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.2e-107 393.7 250 81.2
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.0e-107 392.9 263 76.4
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.0e-107 392.9 253 78.7
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.0e-107 392.9 268 75.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.6e-107 392.5 275 74.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 2.6e-107 392.5 252 80.2
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.0e-106 390.6 266 76.7
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-106 389.8 268 75.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-106 389.8 268 74.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-106 389.4 267 75.3
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.2e-106 389.4 269 74.3
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.0e-106 388.3 287 70.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.0e-106 388.3 287 71.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-105 387.1 268 73.9
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.4e-105 386.7 271 73.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-105 386.7 268 73.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.2e-105 385.2 268 74.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 7.2e-105 384.4 268 73.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 6.1e-104 381.3 270 75.2
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 8.0e-104 380.9 274 73.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 8.8e-103 377.5 266 73.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.4e-102 375.2 257 74.3
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 6.3e-101 371.3 268 74.6
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 8.2e-101 370.9 215 86.5
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.6e-99 366.7 224 86.2
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.9e-99 364.8 262 72.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.0e-98 364.0 274 73.4
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.7e-98 363.2 231 81.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.2e-98 362.8 252 73.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.2e-97 359.0 240 78.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.2e-97 357.8 235 80.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-95 352.8 246 77.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 5.2e-95 351.7 285 66.3
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.2e-94 350.5 270 70.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.3e-93 344.7 261 69.3
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-91 340.1 235 77.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.1e-89 334.0 260 68.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.4e-89 330.9 225 76.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.2e-86 323.9 234 71.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.6e-86 322.8 261 65.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.7e-86 321.6 277 64.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.6e-80 302.4 179 85.5
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 4.0e-79 298.9 215 75.3
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.8e-79 298.1 179 83.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.5e-78 294.7 174 85.6
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 7.0e-76 288.1 251 63.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 8.6e-74 281.2 254 59.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.3e-73 279.3 274 55.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.6e-72 276.9 235 63.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.0e-72 274.6 254 61.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 8.9e-71 271.2 266 55.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.6e-70 269.6 264 56.1
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.1e-68 264.2 179 74.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 2.4e-68 263.1 223 63.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 9.5e-65 251.1 229 59.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.8e-64 249.6 175 69.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.1e-60 235.7 205 63.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-59 234.2 257 56.8
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.6e-59 233.8 139 85.6
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.6e-59 232.3 163 73.0
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 5.8e-54 215.3 171 68.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.6e-50 201.8 158 67.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.5e-49 200.7 237 45.6
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 4.6e-43 179.1 120 72.5
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.7e-42 174.9 112 77.7
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.6e-41 172.2 120 78.3
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.6e-32 142.9 78 88.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.0e-31 138.3 82 85.4
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.1e-27 127.1 64 95.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-18 98.2 82 62.2
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 5.1e-18 95.9 66 75.8
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 8.2e-16 88.6 88 56.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 4.1e-15 86.3 56 78.6
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.3e-12 75.1 56 67.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.0e-10 71.6 46 80.4


User provided reference genes

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