Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 6.1e-38 160.2 76 100.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 8.9e-29 129.8 62 96.8
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 2.0e-28 128.6 62 95.2
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 2.4e-26 121.7 62 88.7
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.6e-25 119.0 62 88.7
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.6e-25 119.0 62 88.7
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 2.0e-25 118.6 61 88.5
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 4.6e-25 117.5 62 87.1
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 7.8e-25 116.7 62 87.1
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.0e-24 116.3 67 79.1
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.3e-24 115.9 62 83.9
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.0e-24 114.0 62 83.9
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 6.6e-24 113.6 62 82.3
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.5e-23 112.5 61 85.2
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.5e-23 111.7 61 82.0
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.5e-23 111.7 62 85.5
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 3.3e-23 111.3 56 89.3
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.3e-23 111.3 62 82.3
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 7.3e-23 110.2 60 83.3
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.2e-22 109.4 62 79.0
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 2.8e-22 108.2 59 84.7
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 3.6e-22 107.8 62 79.0
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 4.7e-22 107.5 63 81.0
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.7e-22 107.5 62 79.0
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 4.7e-22 107.5 57 84.2
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 6.2e-22 107.1 59 81.4
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 6.2e-22 107.1 59 83.1
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 8.1e-22 106.7 62 77.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 8.1e-22 106.7 62 77.4
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 8.1e-22 106.7 61 80.3
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.1e-21 106.3 62 80.6
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.4e-21 105.9 63 74.6
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.4e-21 105.9 59 79.7
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-21 105.9 59 79.7
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-21 105.9 59 79.7
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-21 105.9 59 79.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.8e-21 105.5 62 74.2
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 2.3e-21 105.1 62 75.8
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.3e-21 105.1 61 78.7
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 3.1e-21 104.8 63 79.4
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 4.0e-21 104.4 62 75.8
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 5.2e-21 104.0 63 76.2
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 6.8e-21 103.6 63 73.0
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.8e-21 103.6 62 75.8
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 8.9e-21 103.2 62 77.4
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 8.9e-21 103.2 62 77.4
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.2e-20 102.8 62 74.2
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.5e-20 102.4 62 77.4
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.5e-20 102.4 62 77.4
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 2.0e-20 102.1 62 74.2
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-20 102.1 57 80.7
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-20 102.1 57 80.7
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.0e-20 102.1 62 79.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 2.0e-20 102.1 62 75.8
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.0e-20 102.1 62 74.2
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.6e-20 101.7 61 77.0
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 3.4e-20 101.3 62 75.8
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 3.4e-20 101.3 60 78.3
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 5.8e-20 100.5 62 72.6
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 5.8e-20 100.5 59 74.6
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 5.8e-20 100.5 61 78.7
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 7.5e-20 100.1 59 74.6
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 7.5e-20 100.1 58 77.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 9.9e-20 99.8 62 72.6
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.3e-19 99.4 60 75.0
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 1.7e-19 99.0 62 72.6
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.7e-19 99.0 65 67.7
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 2.2e-19 98.6 54 81.5
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 2.2e-19 98.6 54 81.5
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.2e-19 98.6 62 72.6
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 3.7e-19 97.8 64 71.9
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.7e-19 97.8 63 77.8
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 6.4e-19 97.1 63 76.2
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 6.4e-19 97.1 62 74.2
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.3e-19 96.7 57 78.9
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 8.3e-19 96.7 58 77.6
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.1e-18 96.3 62 74.2
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.4e-18 95.9 68 69.1
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.4e-18 95.9 61 72.1
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.4e-18 95.9 63 73.0
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.9e-18 95.5 69 69.6
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.9e-18 95.5 63 74.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 2.4e-18 95.1 67 67.2
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.4e-18 95.1 62 71.0
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.4e-18 95.1 62 71.0
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.4e-18 95.1 62 71.0
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.4e-18 95.1 60 68.3
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 3.2e-18 94.7 63 73.0
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.1e-18 94.4 61 73.8
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.1e-18 94.4 60 76.7
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.1e-18 94.4 60 76.7
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.1e-18 94.4 60 76.7
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 4.1e-18 94.4 63 73.0
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.1e-18 94.4 52 78.8
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 5.4e-18 94.0 61 72.1
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 9.2e-18 93.2 64 67.2
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.2e-17 92.8 60 66.7
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 2.7e-17 91.7 53 77.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.5e-17 91.3 58 72.4
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.0e-16 89.7 57 73.7
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.0e-16 89.7 68 63.2
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.0e-16 89.7 65 61.5
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.3e-16 89.4 67 65.7
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.3e-16 89.4 65 61.5
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.3e-16 88.6 64 65.6
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 5.1e-16 87.4 61 68.9
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.6e-16 86.7 63 66.7
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-15 85.5 64 62.5
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 2.5e-15 85.1 59 69.5
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.3e-15 84.7 63 66.7
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 4.3e-15 84.3 58 67.2
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 5.6e-15 84.0 54 66.7
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 2.1e-14 82.0 56 67.9
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 4.7e-14 80.9 71 56.3
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 6.2e-14 80.5 52 65.4
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 1.4e-13 79.3 48 75.0
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.4e-13 79.3 54 61.1
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 5.2e-13 77.4 61 62.3
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 8.9e-13 76.6 69 60.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.5e-12 75.9 58 65.5
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 5.8e-12 73.9 56 60.7
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 5.8e-12 73.9 56 62.5
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.7e-11 72.4 58 58.6
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 2.2e-11 72.0 47 72.3
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.3e-08 62.8 69 50.7
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 2.3e-08 62.0 81 40.7
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 3.0e-08 61.6 38 71.1
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 7.3e-07 57.0 53 52.8
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.8e-06 55.1 36 66.7
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 6.2e-06 53.9 50 46.0
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 6.2e-06 53.9 55 38.2
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 8.1e-06 53.5 68 36.8


User provided reference genes

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