Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 3.0e-177 625.2 336 100.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 9.6e-168 593.6 336 90.5
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.3e-161 573.2 336 86.3
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 5.1e-161 571.2 337 85.5
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 4.5e-149 531.6 316 82.9
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 7.7e-149 530.8 316 81.6
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.1e-145 518.1 316 80.1
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.1e-144 516.9 315 80.6
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 5.1e-137 491.5 317 76.3
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.1e-136 490.3 316 76.3
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.7e-135 486.5 318 75.2
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.7e-133 477.6 341 69.2
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.0e-132 477.2 318 74.2
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.0e-132 477.2 314 73.9
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 3.8e-132 475.3 318 73.0
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.8e-132 475.3 315 73.7
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 6.5e-132 474.6 318 73.0
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.2e-130 470.3 316 73.7
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.6e-130 469.9 318 72.6
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.6e-130 469.9 318 72.3
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.6e-130 469.9 318 71.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.7e-130 469.2 316 73.1
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 3.6e-130 468.8 314 73.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 4.7e-130 468.4 316 72.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 6.1e-130 468.0 318 71.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.0e-129 465.7 319 72.4
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.7e-129 464.5 317 70.7
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 2.6e-128 462.6 314 72.6
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.7e-128 461.5 314 72.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.7e-127 459.9 335 68.7
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.7e-127 459.9 317 72.6
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.2e-127 459.5 314 71.7
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.8e-126 456.4 316 71.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 2.4e-126 456.1 333 68.5
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.2e-125 453.8 314 71.7
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 2.0e-125 453.0 316 71.5
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 2.0e-125 453.0 316 71.5
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.5e-125 452.2 314 71.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.8e-124 448.7 312 71.2
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.5e-123 446.8 316 71.8
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 9.4e-123 444.1 315 71.4
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.1e-122 443.0 305 72.5
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.6e-122 442.2 325 69.2
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 4.7e-122 441.8 314 72.3
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.3e-121 439.5 317 68.8
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 4.0e-121 438.7 320 68.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.0e-121 438.7 317 67.2
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.2e-121 438.3 318 67.6
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 8.8e-121 437.6 313 70.9
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.5e-120 436.8 313 67.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 5.7e-120 434.9 318 66.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 2.8e-119 432.6 314 67.2
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.7e-119 432.2 314 67.5
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 6.3e-119 431.4 317 67.5
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 6.3e-119 431.4 316 67.7
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-118 430.6 317 70.3
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-118 430.6 317 70.3
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.3e-118 428.3 317 67.8
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.2e-117 427.2 313 67.7
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.2e-117 427.2 313 68.1
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.6e-117 426.8 315 67.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.0e-117 426.4 313 67.7
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.3e-116 423.7 317 66.6
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.7e-116 423.3 315 66.3
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.9e-116 422.5 255 81.2
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.8e-116 422.2 317 67.5
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 3.8e-116 422.2 317 67.8
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 3.8e-116 422.2 317 67.8
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 5.0e-116 421.8 314 67.5
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 6.5e-116 421.4 312 68.3
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 6.5e-116 421.4 312 68.3
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 6.5e-116 421.4 312 68.3
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 8.5e-116 421.0 317 67.5
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.9e-115 419.9 309 65.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 9.4e-115 417.5 314 66.9
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.2e-114 417.2 318 64.8
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.2e-114 417.2 317 66.9
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 2.1e-114 416.4 312 66.0
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 2.1e-114 416.4 317 66.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 2.1e-114 416.4 317 66.6
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 3.0e-113 412.5 312 67.9
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 6.8e-113 411.4 316 65.2
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.4e-112 409.1 321 64.2
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 4.4e-112 408.7 316 64.6
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 6.3e-111 404.8 316 63.6
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 8.3e-111 404.4 316 63.9
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 8.3e-111 404.4 316 63.0
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.1e-110 402.5 281 71.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 4.1e-110 402.1 317 64.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.4e-110 401.7 314 60.2
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 5.4e-110 401.7 314 60.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.0e-108 397.5 313 63.3
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 5.0e-108 395.2 314 62.4
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 6.6e-108 394.8 314 61.8
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.1e-107 394.0 312 62.8
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.2e-106 390.6 317 61.8
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.0e-106 387.9 303 65.3
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.0e-105 387.5 315 64.1
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 5.2e-105 385.2 314 63.7
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.8e-103 379.4 317 60.3
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.8e-102 376.7 270 70.0
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 5.9e-101 371.7 311 60.5
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.9e-100 369.4 314 61.1
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 7.3e-99 364.8 315 55.2
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.3e-99 364.8 318 56.9
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.2e-98 364.0 307 61.2
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.4e-97 360.5 315 56.5
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.3e-97 359.8 310 57.4
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.1e-97 359.4 317 58.4
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.2e-97 358.6 250 69.6
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.4e-96 355.9 317 57.4
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 9.8e-96 354.4 290 64.5
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 8.3e-95 351.3 380 51.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.9e-94 350.1 317 55.8
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.3e-92 344.0 317 54.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 5.0e-92 342.0 309 57.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 5.6e-91 338.6 305 57.0
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 7.3e-91 338.2 262 61.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-90 337.0 309 54.7
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.8e-90 336.3 314 52.5
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.2e-90 335.1 315 53.3
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 8.0e-90 334.7 233 70.8
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.8e-89 333.6 317 50.5
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.8e-89 333.6 305 56.4
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 2.3e-89 333.2 305 56.4
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 3.1e-89 332.8 314 54.8
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 3.1e-89 332.8 315 53.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.1e-89 332.8 305 56.7
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 8.9e-89 331.3 314 51.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.4e-88 329.3 313 54.0
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 5.8e-88 328.6 308 53.9
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.8e-88 328.6 314 51.3
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-87 327.4 313 54.0
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.9e-86 323.6 315 53.0
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.9e-86 323.6 315 53.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 3.2e-86 322.8 317 53.0
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.0e-85 318.5 317 50.8
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-84 317.8 312 51.3
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.6e-84 314.7 245 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 5.6e-83 312.0 315 50.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.1e-82 310.1 315 50.5
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 4.7e-82 308.9 252 60.7
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 8.9e-81 304.7 312 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.0e-80 303.5 316 47.5
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.4e-78 297.4 189 73.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 5.4e-78 295.4 267 58.1
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.7e-77 293.1 179 78.2
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 7.8e-77 291.6 249 62.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-75 286.6 191 71.2
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.3e-75 285.8 189 74.1
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 8.1e-74 281.6 189 72.0
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.3e-68 263.5 318 45.3
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.6e-67 258.1 189 64.0
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 8.1e-66 255.0 195 64.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.4e-65 254.2 183 70.5
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 4.6e-61 239.2 154 77.9
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 3.3e-59 233.0 234 52.6
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.6e-58 230.7 190 57.4
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 8.1e-58 228.4 311 41.2
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.4e-55 218.4 184 57.6
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 4.3e-51 206.1 228 53.9
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 2.9e-47 193.4 300 38.3
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 2.7e-37 160.2 162 53.1
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.5e-35 153.7 136 60.3
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-31 141.4 172 42.4
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.9e-30 137.5 104 69.2
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 6.1e-29 132.5 310 31.6
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 8.8e-28 128.6 89 65.2
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 2.5e-27 127.1 92 66.3
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 5.3e-25 119.4 81 67.9
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 6.9e-25 119.0 95 61.1
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 9.1e-25 118.6 77 74.0
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 2.0e-24 117.5 80 70.0
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 2.5e-22 110.5 76 64.5
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 3.3e-19 100.1 306 27.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-15 88.6 75 64.0
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.2e-13 81.6 48 77.1
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-13 80.9 63 66.7
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 5.2e-12 76.3 54 64.8
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 6.7e-12 75.9 57 64.9
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 3.3e-11 73.6 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.5e-08 63.2 71 46.5


User provided reference genes

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