Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G052300 Phaseolus vulgaris HOM05D003286 ORTHO05D050290 1.1e-217 760.0 472 100.0
VMungo0720G0763 Vigna mungo HOM05D035721 ORTHO05D050290 6.7e-66 255.8 412 51.5
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 4.1e-47 193.4 164 63.4
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 9.1e-39 165.6 144 61.1
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 2.0e-25 121.3 163 43.6
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 5.7e-25 119.8 157 43.3
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 9.7e-25 119.0 163 46.0
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 8.3e-24 115.9 165 42.4
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 8.3e-24 115.9 168 42.9
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 3.1e-23 114.0 163 44.2
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 4.1e-23 113.6 166 45.8
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 1.2e-22 112.1 163 40.5
VMungo0720G0674 Vigna mungo HOM05D003286 ORTHO05D002463 1.6e-22 111.7 165 40.0
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.0e-22 111.3 177 39.5
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 3.5e-22 110.5 165 41.8
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 4.5e-22 110.2 169 41.4
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.0e-21 109.0 166 39.8
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 1.0e-21 109.0 169 41.4
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.0e-21 109.0 168 40.5
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.7e-21 108.2 164 40.2
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 2.2e-21 107.8 168 39.3
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 2.2e-21 107.8 168 40.5
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.2e-21 107.8 163 38.7
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 2.9e-21 107.5 169 40.8
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.9e-21 107.5 163 40.5
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 2.9e-21 107.5 182 39.0
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 6.5e-21 106.3 179 40.2
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 8.5e-21 105.9 178 39.3
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.1e-20 105.5 174 36.8
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 1.9e-20 104.8 170 38.8
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.9e-20 104.8 168 39.3
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 2.5e-20 104.4 166 36.7
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.1e-19 101.3 168 37.5
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 3.6e-19 100.5 167 39.5
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 4.7e-19 100.1 168 36.3
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 6.1e-19 99.8 169 37.3
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 6.1e-19 99.8 162 39.5
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 6.1e-19 99.8 158 39.9
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.0e-18 99.0 155 40.0
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.8e-18 98.2 163 36.8
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.8e-18 98.2 164 38.4
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 1.8e-18 98.2 164 36.6
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.3e-18 97.8 161 37.9
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 4.0e-18 97.1 166 36.1
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 5.2e-18 96.7 184 35.9
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 6.8e-18 96.3 160 41.9
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 2.0e-17 94.7 167 38.3
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.6e-17 94.4 168 35.7
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 5.7e-17 93.2 192 34.9
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.3e-16 92.0 188 34.6
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.3e-16 92.0 170 36.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 4.8e-16 90.1 130 38.5
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 6.3e-16 89.7 180 34.4
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 6.3e-16 89.7 180 34.4
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 8.3e-16 89.4 174 34.5
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 8.3e-16 89.4 182 33.0
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 8.3e-16 89.4 171 33.9
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 1.8e-15 88.2 167 34.7
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 4.1e-15 87.0 185 35.7
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 4.1e-15 87.0 178 32.6
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 7.0e-15 86.3 196 31.6
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 9.1e-15 85.9 183 33.3
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 9.1e-15 85.9 151 37.7
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.2e-14 85.5 177 32.8
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 1.6e-14 85.1 164 35.4
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.0e-14 84.7 212 30.7
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 2.7e-14 84.3 147 38.8
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 4.5e-14 83.6 163 35.0
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 7.7e-14 82.8 168 33.9
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 7.7e-14 82.8 130 36.2
Phvul.007G052250 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 7.7e-14 82.8 279 29.4
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.3e-13 81.3 130 36.2
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 3.8e-13 80.5 115 39.1
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 3.8e-13 80.5 166 37.3
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 5.0e-13 80.1 177 35.0
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 5.0e-13 80.1 155 38.7
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 6.6e-13 79.7 144 36.1
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 8.6e-13 79.3 187 34.8
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 8.6e-13 79.3 185 32.4
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.5e-12 78.6 160 36.9
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.9e-12 78.2 197 29.9
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 4.2e-12 77.0 192 31.2
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 5.5e-12 76.6 199 31.7
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.5e-12 76.6 84 46.4
Ca_10982_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.6e-11 75.1 169 33.1
Ca_11002_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.6e-11 75.1 169 33.1
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.6e-11 75.1 178 33.7
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.1e-11 74.7 199 30.7
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 3.6e-11 73.9 188 34.0
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 4.7e-11 73.6 114 36.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 6.1e-11 73.2 87 43.7
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 6.1e-11 73.2 188 30.3
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 6.1e-11 73.2 270 26.7
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 8.0e-11 72.8 100 39.0
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 8.0e-11 72.8 198 29.3
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 8.0e-11 72.8 100 39.0
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 8.0e-11 72.8 100 39.0
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 8.0e-11 72.8 198 29.3
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.8e-10 71.6 87 43.7
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 2.3e-10 71.2 87 42.5
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 2.3e-10 71.2 87 42.5
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 2.3e-10 71.2 87 42.5
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.3e-10 71.2 87 43.7
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 2.3e-10 71.2 162 30.9
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-10 70.9 87 42.5
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.0e-10 70.9 87 42.5
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 3.0e-10 70.9 165 29.1
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.0e-10 70.9 87 42.5
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.0e-10 70.5 87 42.5
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 4.0e-10 70.5 115 37.4
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 4.0e-10 70.5 84 47.6
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 6.8e-10 69.7 107 41.1
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 2.6e-09 67.8 162 32.7
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 2.6e-09 67.8 87 41.4
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 3.4e-09 67.4 107 40.2
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 4.4e-09 67.0 102 40.2
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 4.4e-09 67.0 102 40.2
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 9.8e-09 65.9 81 44.4
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-08 65.5 206 28.2
Eucgr.D01290 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.2e-08 64.7 161 31.1
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.2e-08 64.7 168 30.4
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 2.8e-08 64.3 149 32.9
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 3.7e-08 63.9 198 29.8
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 4.9e-08 63.5 105 38.1
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.9e-08 63.5 83 42.2
Psat6g210240 Pisum sativum HOM05D003286 ORTHO05D002463 6.3e-08 63.2 84 38.1
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 8.3e-08 62.8 87 39.1
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 8.3e-08 62.8 113 37.2
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 8.3e-08 62.8 168 29.8
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.1e-07 62.4 168 31.0
Glyma.10G252150 Glycine max HOM05D035721 ORTHO05D214373 1.4e-07 62.0 69 50.7
Eucgr.L01730 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.8e-07 61.6 159 29.6
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.4e-07 61.2 87 37.9
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 2.4e-07 61.2 90 33.3
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 3.2e-07 60.8 109 37.6
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 4.1e-07 60.5 165 33.3
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 5.4e-07 60.1 90 33.3
Glyma.20G141450 Glycine max HOM05D035721 ORTHO05D212269 7.0e-07 59.7 69 47.8
Lalb_Chr22g0349591 Lupinus albus HOM05D007466 ORTHO05D002463 7.0e-07 59.7 164 31.1
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.2e-06 58.9 90 31.1
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 1.2e-06 58.9 193 30.1
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 1.2e-06 58.9 90 31.1
Zm00001eb225210 Zea mays HOM05D003286 ORTHO05D002463 1.6e-06 58.5 157 29.3
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.0e-06 58.2 84 41.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 4.5e-06 57.0 164 29.3
Medtr1g105515 Medicago truncatula HOM05D003286 ORTHO05D002463 4.5e-06 57.0 175 28.0
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 4.5e-06 57.0 167 31.7
Manes.13G072500 Manihot esculenta HOM05D007466 ORTHO05D002463 5.9e-06 56.6 166 31.9


User provided reference genes

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