Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 4.1e-215 751.1 383 100.0
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 8.0e-195 683.7 380 90.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 6.2e-187 657.5 383 87.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 7.6e-185 650.6 383 86.2
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.3e-163 580.1 385 76.4
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.9e-162 574.3 383 77.8
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.9e-162 574.3 383 77.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 8.4e-160 567.4 384 76.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 5.4e-159 564.7 381 75.3
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.5e-158 562.0 385 75.3
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.5e-148 529.3 380 73.2
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.3e-148 528.5 380 72.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.5e-142 508.8 358 72.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.5e-142 508.8 356 73.0
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.3e-141 506.9 364 70.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.8e-141 506.5 395 67.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.3e-141 506.1 384 67.7
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.0e-141 505.8 389 68.4
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.5e-140 503.4 379 68.3
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.9e-140 503.1 393 66.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 6.3e-139 498.0 367 69.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.1e-138 497.3 358 70.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.4e-138 496.1 385 65.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.4e-138 496.1 389 66.3
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.4e-138 496.1 388 66.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.3e-138 495.0 370 68.4
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.3e-138 495.0 375 68.5
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.9e-138 494.6 359 71.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.5e-137 493.4 395 64.1
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.6e-137 492.7 353 72.2
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.4e-137 492.3 384 66.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 5.9e-137 491.5 367 68.4
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 7.7e-137 491.1 375 68.0
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 7.7e-137 491.1 386 66.1
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 5.0e-136 488.4 413 63.2
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 6.5e-136 488.0 389 65.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 8.5e-136 487.6 374 67.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.1e-135 487.3 386 66.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.4e-135 484.2 358 70.7
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.7e-134 482.6 357 68.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 6.1e-134 481.5 393 65.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.3e-133 479.6 347 70.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.9e-133 478.8 356 69.7
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.9e-133 478.8 391 64.5
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 8.8e-133 477.6 358 67.9
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.5e-132 476.1 390 63.3
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.3e-132 475.7 366 66.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.3e-132 475.7 384 65.6
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 4.3e-132 475.3 373 65.4
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 4.3e-132 475.3 384 65.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 5.7e-132 474.9 366 67.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.3e-131 473.8 364 67.6
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.2e-131 473.0 358 69.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.8e-131 472.6 385 64.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.3e-131 471.5 357 67.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 8.2e-131 471.1 367 66.8
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.1e-130 468.8 354 67.2
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.1e-130 468.8 385 64.2
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 5.3e-130 468.4 379 63.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.7e-128 463.4 360 66.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.1e-127 460.7 358 64.8
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 7.2e-127 458.0 399 62.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 9.4e-127 457.6 357 64.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.6e-126 456.8 362 64.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.1e-126 456.4 360 65.0
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.1e-126 456.4 392 61.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.1e-126 456.4 287 77.4
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.7e-126 455.3 374 61.2
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 7.9e-126 454.5 368 63.6
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.0e-125 454.1 364 64.6
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 8.8e-125 451.1 358 65.1
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.8e-125 451.1 379 62.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.6e-124 449.5 359 64.1
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 2.8e-123 446.0 368 64.1
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.7e-123 445.7 367 61.3
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.8e-123 445.3 287 75.3
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 8.2e-123 444.5 374 61.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.2e-123 444.5 361 65.4
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.4e-122 443.0 366 61.5
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.1e-122 442.2 359 63.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.3e-122 441.8 287 74.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 7.0e-122 441.4 325 69.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.0e-121 439.9 368 63.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.6e-121 439.5 353 63.7
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.5e-121 439.1 363 62.0
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.0e-120 437.6 300 72.7
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-120 437.2 355 64.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.9e-120 436.0 366 62.3
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.8e-120 435.6 358 63.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 6.5e-120 434.9 351 64.1
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 8.5e-120 434.5 353 64.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 8.5e-120 434.5 353 64.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-119 434.1 358 63.7
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.5e-119 433.0 362 62.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 9.4e-119 431.0 366 62.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-118 430.3 353 64.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 6.1e-118 428.3 397 58.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 8.0e-118 427.9 385 62.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.8e-117 426.8 395 57.5
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 5.2e-117 425.2 291 71.1
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 4.4e-116 422.2 372 60.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 4.8e-115 418.7 377 60.5
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 4.1e-114 415.6 355 62.0
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.0e-114 414.8 321 65.1
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 7.0e-114 414.8 355 60.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.2e-112 409.8 379 58.8
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 5.0e-112 408.7 349 61.3
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.5e-111 407.1 364 59.1
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.5e-111 406.4 365 59.2
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.2e-111 405.6 361 61.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 5.5e-111 405.2 286 69.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-109 399.4 356 60.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.2e-108 397.5 368 59.0
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.5e-108 397.1 358 60.1
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.6e-108 396.4 484 46.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.3e-107 394.0 362 60.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 6.3e-107 391.7 358 59.5
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 6.3e-107 391.7 358 59.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 8.3e-107 391.3 358 60.3
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.4e-106 390.6 321 64.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-106 389.4 358 60.1
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.4e-106 388.7 359 59.6
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.4e-106 388.7 359 59.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 7.0e-106 388.3 364 56.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-105 387.5 358 59.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.0e-105 386.7 355 54.9
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.5e-105 385.6 358 59.5
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.9e-105 385.2 348 60.1
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.0e-104 384.4 359 59.1
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.3e-104 384.0 386 55.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 6.5e-104 381.7 357 58.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 7.2e-103 378.3 283 65.7
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.8e-101 373.6 290 60.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.6e-96 355.1 285 63.9
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.1e-94 350.1 273 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 4.1e-90 335.9 365 50.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 8.0e-86 321.6 299 56.2
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-85 320.9 251 64.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-69 268.1 180 73.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 4.2e-58 229.6 289 43.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.1e-57 227.3 324 39.8
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 9.9e-52 208.4 154 64.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-51 208.0 256 48.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-51 207.2 171 61.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.9e-35 153.7 248 38.7
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 8.5e-27 125.6 202 39.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.9e-23 114.4 174 42.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 3.3e-23 113.6 102 59.8
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.7e-22 110.2 72 68.1
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 2.6e-20 104.0 118 51.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.8e-16 91.3 232 29.3
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 6.9e-13 79.3 56 64.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.2e-10 70.5 97 44.3


User provided reference genes

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