Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.7e-104 382.1 206 100.0
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 3.7e-93 345.1 209 90.9
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.5e-86 322.4 212 85.4
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.4e-83 312.0 212 84.4
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-68 263.8 192 78.1
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.4e-65 253.4 212 72.2
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 6.1e-64 248.1 213 70.4
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 7.9e-64 247.7 210 71.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 7.2e-57 224.6 211 64.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.5e-54 216.9 210 65.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 4.4e-54 215.3 209 64.6
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.0e-51 206.5 208 62.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.6e-48 195.7 209 59.3
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.7e-45 186.8 209 58.9
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.8e-45 186.0 186 59.1
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.3e-45 184.9 186 59.1
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 8.2e-45 184.5 212 58.5
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.1e-44 184.1 214 53.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 4.1e-44 182.2 206 54.9
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 9.1e-44 181.0 219 54.8
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.6e-43 180.3 186 58.6
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.7e-42 176.8 216 52.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.9e-42 176.0 207 53.6
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 3.8e-42 175.6 195 58.5
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 5.0e-42 175.3 165 64.8
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.2e-41 172.2 206 51.9
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 5.5e-41 171.8 197 55.3
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.6e-40 170.2 190 56.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 3.6e-40 169.1 191 54.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.1e-40 168.3 213 54.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.0e-40 167.9 187 55.1
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.8e-39 166.8 215 52.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.8e-39 166.8 207 54.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.0e-39 166.0 219 55.7
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 6.8e-39 164.9 204 50.0
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 8.8e-39 164.5 208 50.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.8e-39 164.5 203 49.8
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.2e-38 164.1 199 55.8
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 3.4e-38 162.5 178 53.9
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.4e-38 162.5 204 50.0
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 9.8e-38 161.0 205 52.7
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.7e-37 159.1 190 52.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-36 156.8 212 50.5
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.2e-35 154.1 191 51.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-35 152.5 210 51.4
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 4.5e-35 152.1 193 50.3
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.0e-34 151.0 196 50.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.3e-34 149.8 217 54.4
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 5.0e-34 148.7 203 50.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.6e-34 147.9 211 50.7
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-33 147.5 211 50.7
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.5e-33 147.1 196 52.0
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-33 146.7 116 73.3
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 3.3e-33 146.0 192 49.5
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 4.2e-33 145.6 205 53.7
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 5.5e-33 145.2 174 58.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 7.2e-33 144.8 202 47.0
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.2e-32 144.1 201 48.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.7e-32 142.1 175 56.6
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.7e-32 142.1 202 45.5
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 8.0e-32 141.4 188 48.9
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.0e-31 141.0 204 47.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-31 140.2 210 46.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.3e-31 139.8 210 45.7
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.3e-31 139.8 218 44.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.0e-31 139.4 197 52.3
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.0e-31 139.0 213 47.4
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.5e-30 137.1 186 48.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.9e-29 132.1 201 45.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.9e-29 132.1 159 54.1
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 4.9e-29 132.1 191 50.3
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 4.9e-29 132.1 196 47.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.4e-28 130.6 207 46.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.8e-28 130.2 212 44.8
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 3.1e-28 129.4 177 51.4
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 3.1e-28 129.4 208 48.6
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.5e-27 125.9 201 50.2
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.5e-27 125.6 170 50.6
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 7.8e-27 124.8 206 46.1
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.9e-26 122.9 177 50.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 3.8e-26 122.5 208 47.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.5e-25 120.6 180 45.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.3e-25 119.0 210 49.5
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 5.6e-25 118.6 186 46.2
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.1e-24 116.7 194 41.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.6e-24 115.9 211 47.9
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.6e-24 115.9 211 47.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.1e-24 115.2 182 48.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.1e-24 115.2 209 45.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.0e-24 114.8 168 50.0
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.8e-23 113.6 139 54.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 6.8e-23 111.7 207 41.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.0e-22 110.2 207 42.0
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.0e-22 110.2 196 43.4
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.0e-22 110.2 191 45.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-22 109.8 212 41.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.4e-22 109.0 191 44.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 5.8e-22 108.6 210 40.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-21 107.5 135 54.1
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.9e-21 106.3 213 43.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 3.7e-21 105.9 206 44.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.2e-20 102.8 187 46.5
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.6e-19 100.5 227 35.7
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.6e-19 100.5 81 70.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.0e-18 95.5 183 43.2
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.1e-17 94.4 126 49.2
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.1e-17 94.4 169 43.8
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.9e-17 93.6 172 44.2
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.3e-17 92.4 175 40.0
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.6e-17 92.0 202 39.6
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.6e-17 92.0 195 39.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.3e-17 91.7 172 41.9
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.6e-16 90.5 194 39.2
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 8.0e-16 88.2 187 39.6
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 8.0e-16 88.2 173 39.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-15 87.4 164 40.9
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.4e-15 87.4 183 38.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-15 87.0 170 39.4
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.8e-15 87.0 175 40.0
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.3e-15 86.7 170 40.0
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.3e-15 86.7 170 40.0
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 3.1e-15 86.3 174 40.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.1e-15 86.3 170 40.0
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.8e-15 85.1 189 39.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 8.9e-15 84.7 189 39.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 8.9e-15 84.7 189 40.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 8.9e-15 84.7 189 40.2
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.2e-14 84.3 170 38.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.0e-14 83.6 171 40.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.0e-14 83.6 182 39.6
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.4e-14 82.8 180 40.0
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.8e-14 82.0 88 58.0
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 7.5e-14 81.6 174 40.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 9.8e-14 81.3 213 36.2
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.3e-13 80.9 180 36.7
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.3e-13 80.9 155 42.6
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.7e-13 80.5 182 36.8
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 2.9e-13 79.7 117 47.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 6.4e-13 78.6 172 39.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-12 77.8 162 38.9
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 7.0e-12 75.1 170 39.4
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 7.0e-12 75.1 127 44.9
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 9.2e-12 74.7 162 40.1
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.6e-11 72.4 186 35.5
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.6e-11 72.4 192 38.5
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.6e-10 68.6 178 34.3
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.3e-09 66.2 176 37.5
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 3.3e-09 66.2 125 40.0
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.3e-09 65.9 170 37.1
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 2.1e-08 63.5 176 38.6
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.7e-08 62.4 179 36.3
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 6.2e-08 62.0 213 33.8
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.1e-07 61.2 92 41.3
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.4e-07 60.8 57 59.6
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.5e-06 57.4 193 35.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 9.9e-06 54.7 173 32.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 9.9e-06 54.7 223 31.4
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 9.9e-06 54.7 59 54.2


User provided reference genes

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