Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.6e-199 699.1 337 100.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.2e-188 662.1 338 94.4
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.5e-184 649.4 339 92.6
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.5e-184 648.7 338 92.3
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 9.6e-176 620.2 338 88.5
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.2e-173 613.2 338 86.7
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.5e-173 611.3 339 85.5
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.9e-172 608.6 339 85.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 9.3e-171 603.6 338 85.2
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.3e-169 599.7 338 85.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.8e-169 599.4 338 85.8
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.5e-168 595.5 338 84.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.4e-157 558.5 348 78.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.8e-156 555.1 354 77.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-155 552.7 342 77.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 7.2e-155 550.8 347 78.1
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.2e-154 550.1 339 78.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.8e-153 546.2 346 75.7
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 3.0e-153 545.4 347 76.7
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.1e-152 543.5 351 76.1
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.5e-152 543.1 354 75.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 4.3e-152 541.6 357 75.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-151 540.0 347 75.8
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 8.2e-151 537.3 338 76.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-150 536.6 345 74.5
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.8e-150 536.2 345 74.5
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.4e-150 535.8 335 77.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.9e-150 534.3 339 76.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.0e-149 532.7 355 73.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.0e-149 532.7 355 74.1
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.3e-148 530.0 352 73.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.3e-148 530.0 353 75.1
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-148 529.3 345 73.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.5e-148 527.7 336 75.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 8.5e-148 527.3 331 77.3
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.1e-147 526.9 346 75.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.9e-147 526.2 369 70.7
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 9.4e-147 523.9 350 73.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.1e-146 522.7 347 72.9
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.1e-146 522.7 347 72.9
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.1e-146 522.7 352 73.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.7e-146 522.3 348 73.6
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-145 520.4 345 73.0
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.4e-145 520.0 345 73.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.3e-145 519.2 344 72.7
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.3e-145 519.2 352 72.7
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.0e-145 518.8 345 72.8
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.1e-145 518.1 363 71.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.7e-145 517.7 348 73.0
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-144 516.9 343 73.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-144 516.5 345 72.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 7.4e-144 514.2 348 73.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.2e-143 512.7 345 72.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.2e-143 512.7 371 69.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 3.7e-143 511.9 360 70.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 8.2e-143 510.8 341 72.1
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.1e-142 510.4 346 71.7
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.4e-142 510.0 345 71.3
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.8e-142 509.6 342 72.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.8e-142 509.6 371 69.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.4e-142 509.2 347 71.2
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 2.4e-142 509.2 348 71.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-142 508.8 340 71.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 9.1e-142 507.3 336 72.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-141 506.5 346 71.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.5e-141 505.4 353 69.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 5.9e-141 504.6 349 70.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 7.7e-141 504.2 348 71.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 7.7e-141 504.2 363 70.8
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.5e-140 501.1 338 71.0
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.1e-139 500.4 349 69.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.5e-139 500.0 349 69.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.2e-139 498.8 346 70.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.2e-139 498.4 349 70.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.1e-138 496.1 342 71.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.3e-137 492.7 341 71.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.1e-136 490.3 342 71.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.1e-136 490.3 342 71.3
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 4.4e-136 488.4 342 72.5
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.4e-136 488.4 344 70.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 7.4e-136 487.6 339 73.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.7e-136 487.3 350 70.3
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.7e-135 486.5 342 70.5
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.2e-135 486.1 362 67.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.8e-135 485.7 347 69.7
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 3.7e-135 485.3 342 71.6
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.1e-134 483.8 342 71.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-134 483.4 342 71.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.4e-134 483.4 337 71.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 7.0e-134 481.1 337 70.9
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.6e-133 479.2 342 69.0
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.5e-133 478.4 339 69.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.2e-132 476.1 325 70.8
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 5.0e-132 474.9 337 69.7
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 5.0e-132 474.9 337 69.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 6.5e-132 474.6 334 71.6
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 8.5e-132 474.2 336 70.5
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.1e-131 473.8 363 65.8
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.9e-131 473.0 334 71.3
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.2e-131 471.9 351 67.5
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 5.5e-131 471.5 351 67.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.7e-130 469.2 334 70.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 5.2e-129 464.9 336 68.2
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 6.8e-129 464.5 361 64.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.5e-128 461.1 366 64.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.7e-127 459.9 345 65.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.2e-127 459.5 339 66.1
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 5.4e-126 454.9 342 68.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.5e-125 451.8 331 69.2
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.9e-124 449.1 324 69.1
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.8e-124 448.7 356 61.8
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-123 447.2 371 60.4
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-122 443.7 337 68.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.7e-122 442.6 333 66.4
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.4e-121 440.3 337 65.9
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.8e-121 439.9 363 60.9
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.3e-121 439.5 316 69.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.0e-121 439.1 304 69.4
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 5.2e-121 438.3 350 64.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.1e-118 430.6 520 48.7
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.4e-118 430.3 411 55.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.8e-118 429.9 319 68.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.0e-117 426.4 352 61.9
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.9e-115 419.9 336 63.4
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 8.0e-114 414.5 330 62.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.2e-112 410.6 356 59.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.6e-109 400.2 425 52.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.0e-108 395.2 322 60.6
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.6e-107 391.7 365 58.1
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.1e-106 389.8 407 52.3
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.6e-106 389.0 311 64.6
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.7e-103 379.0 355 54.9
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.0e-97 359.0 342 56.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-95 353.6 330 57.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 5.8e-88 328.6 388 46.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 8.4e-87 324.7 374 46.8
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.0e-84 316.2 230 67.4
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.9e-79 299.7 305 54.4
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.4e-78 295.4 188 79.3
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 8.7e-76 288.1 163 81.6
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.0e-73 279.3 210 69.0
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 9.0e-73 278.1 358 45.0
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 9.0e-73 278.1 364 44.5
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 9.3e-70 268.1 229 59.8
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 9.3e-70 268.1 229 59.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.3e-68 264.2 342 42.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.6e-66 256.1 229 55.0
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.8e-66 255.8 224 63.4
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.4e-65 254.2 386 38.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.4e-62 243.4 209 62.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.1e-54 218.0 133 82.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-52 211.1 167 66.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 6.1e-45 185.7 128 64.8
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.2e-38 162.9 363 34.7
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.7e-37 160.2 88 81.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.1e-33 146.7 340 33.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-31 140.2 122 57.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 7.9e-29 132.1 72 79.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 6.3e-18 95.9 78 64.1
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.0e-15 86.3 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-08 65.1 33 78.8


User provided reference genes

Program Settings