Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.0e-169 599.0 291 100.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.9e-159 565.8 285 95.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 3.8e-152 541.6 284 91.9
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.3e-148 528.1 287 89.2
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 9.6e-140 500.4 284 83.1
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.6e-139 498.4 284 82.0
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.2e-137 493.4 284 81.7
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.2e-137 493.4 284 81.7
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 3.4e-137 491.9 284 81.0
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.5e-137 491.5 284 80.3
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.2e-135 485.0 285 80.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.7e-133 477.2 285 80.4
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.1e-127 460.3 254 85.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.5e-124 449.9 286 74.5
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.5e-124 449.1 288 75.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.3e-124 448.4 286 74.1
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.3e-124 448.4 286 74.1
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 8.2e-123 444.1 286 73.4
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.1e-122 443.7 285 74.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.4e-122 443.4 286 73.1
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.9e-122 441.0 287 72.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.4e-121 438.7 287 71.8
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.4e-121 438.7 287 71.8
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.4e-121 438.7 285 72.3
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 4.5e-121 438.3 285 73.0
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.8e-121 438.0 280 73.6
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.8e-121 438.0 285 73.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 5.8e-121 438.0 289 72.3
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.9e-120 435.6 286 72.7
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.9e-120 434.9 286 73.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 4.9e-120 434.9 286 72.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.9e-120 434.9 287 74.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 6.5e-120 434.5 286 73.1
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.4e-119 433.3 285 71.9
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.5e-119 432.6 285 73.7
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 7.1e-119 431.0 286 72.4
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 9.3e-119 430.6 284 70.8
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.2e-118 430.3 286 71.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.6e-118 429.9 286 70.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 72.0
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.7e-118 429.1 287 71.8
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.8e-117 426.4 286 72.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.3e-117 426.0 286 69.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.9e-117 425.2 286 71.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.9e-117 425.2 286 71.7
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 5.1e-117 424.9 285 70.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 8.7e-117 424.1 286 71.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.9e-116 422.9 284 68.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 9.7e-116 420.6 286 71.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.6e-115 419.9 286 70.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.2e-115 419.5 286 71.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 2.2e-115 419.5 286 70.6
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.8e-115 419.1 288 69.1
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.8e-115 419.1 288 69.8
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.3e-115 417.9 285 70.9
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 8.2e-115 417.5 286 70.3
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 3.1e-114 415.6 287 70.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.1e-114 415.2 285 70.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 4.1e-114 415.2 286 68.5
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.9e-114 414.5 286 70.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 4.5e-113 411.8 285 70.2
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 4.5e-113 411.8 287 68.6
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.7e-113 411.0 255 76.9
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.0e-112 410.6 287 68.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.3e-112 410.2 284 66.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.3e-112 410.2 284 68.7
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.7e-112 409.8 286 67.1
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.7e-112 409.8 326 63.5
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.2e-112 409.5 296 66.9
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.9e-112 409.1 285 69.5
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.9e-112 409.1 285 70.2
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.9e-112 409.1 284 66.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.8e-112 408.7 284 68.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 5.0e-112 408.3 284 67.6
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.0e-112 408.3 284 66.5
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.5e-112 407.5 284 66.9
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.1e-111 407.1 285 69.8
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.2e-111 405.6 286 69.9
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.2e-110 403.7 289 67.1
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.2e-110 403.7 294 64.3
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.1e-110 402.9 287 65.9
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.4e-109 400.2 258 75.6
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.1e-109 398.3 238 78.2
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 6.7e-109 397.9 284 66.5
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.1e-108 397.1 277 67.9
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.3e-108 395.6 301 65.8
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.3e-108 395.2 286 65.4
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 5.7e-108 394.8 289 65.1
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 9.7e-108 394.0 281 67.3
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 6.3e-107 391.3 288 64.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.3e-107 391.3 322 58.7
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 5.3e-106 388.3 296 62.8
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.4e-105 385.6 291 62.9
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.9e-103 379.8 260 68.8
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.1e-102 376.3 285 65.3
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 3.6e-102 375.6 288 64.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.9e-102 374.4 324 58.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.9e-102 374.4 324 58.3
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-101 373.2 285 63.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.9e-101 372.1 285 61.1
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.1e-100 370.5 254 68.9
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 2.6e-100 369.4 289 64.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.3e-100 369.0 286 63.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 9.1e-98 360.9 278 60.1
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 5.9e-97 358.2 255 67.5
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.7e-96 356.7 277 61.4
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.2e-96 356.3 287 60.6
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-95 353.6 229 73.4
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 5.2e-93 345.1 280 60.7
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.5e-92 343.6 261 67.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.7e-91 340.1 286 58.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.6e-89 332.8 208 76.9
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.0e-88 330.9 241 65.6
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 7.2e-87 324.7 285 56.8
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.3e-85 319.7 285 54.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 3.3e-84 315.8 277 54.2
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.2e-80 303.1 293 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.8e-77 293.5 238 60.5
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.8e-77 293.5 245 56.3
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.6e-73 280.4 229 64.2
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.0e-65 253.4 169 67.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.5e-63 246.5 192 64.1
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 5.0e-56 222.2 297 44.8
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.9e-51 206.5 262 43.9
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-45 187.6 131 67.2
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 5.8e-44 182.2 149 63.8
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 9.9e-44 181.4 264 39.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 4.1e-42 176.0 152 61.2
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.1e-41 173.7 149 61.7
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.9e-39 167.2 153 57.5
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.6e-38 162.9 137 62.8
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.4e-34 151.0 109 63.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-30 136.7 260 31.5
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 8.4e-27 125.2 368 27.4
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 4.6e-25 119.4 92 63.0
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-24 117.1 169 37.9
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-22 111.3 70 71.4
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 1.3e-22 111.3 123 54.5
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.1e-22 108.6 83 61.4
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.1e-21 106.7 101 52.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 6.9e-21 105.5 89 60.7
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.2e-18 96.7 60 66.7
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.9e-15 87.4 71 57.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.5e-15 87.0 78 53.8
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.1e-14 82.0 110 45.5
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.1e-14 82.0 189 31.7
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.0e-13 78.6 46 71.7
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 46 71.7
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 46 71.7
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.6e-12 77.0 138 36.2
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.6e-12 75.5 46 67.4
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-11 75.1 61 60.7
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-11 74.3 93 43.0
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.1e-10 71.6 93 43.0
VMungo1309G0877 Vigna mungo HOM05D000050 ORTHO05D000380 1.1e-10 71.6 49 75.5
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-10 71.2 89 44.9
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-10 71.2 89 44.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.6e-09 67.8 37 83.8
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-08 65.1 57 56.1


User provided reference genes

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