Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.9e-243 844.3 418 100.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.1e-233 812.0 418 95.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.8e-232 808.9 418 94.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.5e-226 788.5 418 92.1
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 9.6e-226 786.6 418 92.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 6.2e-225 783.9 417 90.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-224 782.3 417 90.4
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.2e-221 771.5 416 89.2
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.5e-221 770.8 418 88.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.3e-219 766.1 416 87.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 3.9e-219 764.6 418 88.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-218 762.3 417 87.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.7e-217 758.1 418 87.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.1e-216 756.5 416 86.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-212 743.0 450 81.3
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 6.1e-212 740.7 414 84.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.9e-211 738.0 418 84.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.4e-205 719.5 415 82.2
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.2e-205 718.4 416 81.5
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.2e-205 717.2 416 80.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.6e-204 716.1 414 80.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.7e-204 715.3 416 81.7
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.7e-204 715.3 420 83.6
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 7.9e-204 713.8 416 81.0
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-203 712.6 416 80.3
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-203 712.2 415 81.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.3e-203 712.2 416 80.3
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.9e-203 711.4 416 80.0
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 8.8e-203 710.3 417 80.6
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.5e-202 709.5 415 80.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.5e-202 709.5 416 79.6
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.3e-202 708.4 416 79.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.3e-202 708.0 416 80.5
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.3e-202 708.0 415 80.7
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.3e-202 708.0 415 81.2
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 4.3e-202 708.0 416 81.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 4.3e-202 708.0 416 80.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 9.7e-202 706.8 437 78.0
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.7e-201 706.1 416 79.8
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.7e-201 706.1 414 79.5
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.7e-201 704.9 416 79.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.8e-201 704.5 416 80.0
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.8e-201 704.5 436 78.0
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 8.2e-201 703.7 415 80.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.1e-200 703.4 416 80.5
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-200 703.4 415 81.0
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-200 703.4 416 79.3
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 3.1e-200 701.8 414 79.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 79.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 79.1
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.6e-199 698.7 416 78.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 7.7e-199 697.2 415 78.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-198 696.4 417 79.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.0e-198 694.5 411 78.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.4e-197 693.0 433 76.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.2e-197 691.8 417 79.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.5e-197 691.0 416 78.6
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 78.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 79.3
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.1e-196 689.1 416 77.6
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.7e-196 688.7 432 77.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.7e-196 688.0 418 77.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.7e-196 688.0 416 78.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 6.1e-196 687.6 416 77.9
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 7.9e-196 687.2 416 78.4
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 76.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.7e-195 684.1 415 77.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.5e-194 682.9 422 78.9
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.0e-194 682.6 415 77.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.0e-194 682.6 416 76.4
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 76.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 76.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 9.7e-194 680.2 416 76.4
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.3e-193 679.9 416 76.9
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.7e-193 679.5 416 76.4
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.2e-193 679.1 416 76.4
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.7e-193 678.3 416 76.2
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.1e-192 675.2 414 77.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.3e-192 674.5 417 74.6
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 9.1e-192 673.7 416 75.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 9.1e-192 673.7 416 75.5
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-191 673.3 415 76.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.6e-191 672.9 417 76.0
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.0e-191 672.5 417 76.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.6e-191 672.2 411 77.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.5e-191 671.8 432 74.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 4.5e-191 671.4 414 75.4
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.3e-190 669.8 416 75.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-190 669.1 432 74.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 2.2e-190 669.1 416 76.4
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.8e-190 668.3 416 76.9
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-190 667.9 415 77.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.5e-190 667.5 416 76.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 6.5e-190 667.5 423 75.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.1e-189 666.8 418 75.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.5e-189 666.4 432 73.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.9e-189 666.0 416 76.9
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.5e-189 665.6 415 75.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.2e-189 664.1 430 75.1
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.2e-189 664.1 416 75.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 9.4e-189 663.7 416 76.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.2e-188 663.3 417 74.1
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 74.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.1e-188 662.5 417 74.3
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.6e-188 661.8 418 75.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 6.1e-188 661.0 405 78.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 6.1e-188 661.0 412 76.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.3e-187 659.1 416 75.7
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.7e-187 657.5 413 75.8
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.5e-186 654.1 412 73.8
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.7e-185 652.9 416 74.8
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.8e-185 652.1 416 75.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.8e-184 649.4 414 72.5
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 7.0e-184 647.5 417 72.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.7e-183 645.6 456 68.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.7e-183 644.0 412 75.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.5e-181 639.0 412 74.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.2e-181 638.6 417 73.9
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 9.4e-181 637.1 413 72.2
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.2e-180 636.7 414 70.8
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.2e-180 636.7 359 82.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.1e-180 636.0 411 74.7
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 3.4e-178 628.6 417 71.0
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.7e-178 627.9 343 86.3
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 9.8e-178 627.1 416 72.6
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.1e-176 623.6 497 62.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.1e-176 623.6 416 73.3
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.0e-176 620.9 413 72.6
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 3.5e-175 618.6 415 72.5
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.1e-172 609.4 368 77.2
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.3e-171 605.9 358 79.3
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 6.3e-169 597.8 363 77.1
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.0e-168 594.3 411 69.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.5e-167 591.7 416 70.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.3e-161 570.9 341 78.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.7e-158 563.1 412 64.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.0e-156 554.3 412 63.1
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.7e-153 546.6 433 63.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.1e-147 525.8 410 60.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 5.2e-147 525.0 411 60.8
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.0e-146 523.1 414 61.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.6e-142 507.7 315 79.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.9e-139 497.7 301 78.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 8.9e-131 471.1 427 53.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.5e-130 470.3 340 67.1
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.4e-123 446.4 302 73.5
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 3.1e-115 419.5 235 85.1
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.5e-112 408.7 223 85.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-109 400.6 291 67.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.3e-109 399.4 421 49.4
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.2e-103 380.9 498 41.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.5e-101 373.2 406 48.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.1e-99 367.9 244 72.1
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.4e-99 367.5 411 47.2
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.9e-91 338.6 198 79.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.9e-89 333.2 198 77.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.8e-78 295.0 226 69.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.5e-77 294.3 221 65.6
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 7.2e-72 275.4 157 84.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.5e-69 267.7 258 55.4
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 6.3e-68 262.3 174 71.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-63 248.1 167 72.5
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-63 246.9 160 74.4
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.1e-59 233.0 179 64.8
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.3e-54 217.2 229 51.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.3e-52 208.8 181 58.0
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-51 208.4 124 78.2
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.1e-51 206.8 126 76.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 6.6e-49 199.1 126 76.2
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.6e-48 196.1 335 37.6
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.6e-47 194.5 121 71.9
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.7e-44 184.5 341 37.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-38 164.9 124 62.9
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 3.2e-35 153.7 87 87.4
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.1e-35 153.3 95 76.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 6.4e-28 129.4 75 78.7
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.2e-27 125.6 124 54.0
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 9.5e-24 115.5 71 73.2
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 9.9e-21 105.5 87 55.2
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 4.9e-20 103.2 87 55.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 6.9e-14 82.8 57 68.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.1e-10 71.2 59 64.4
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 5.1e-09 66.6 58 51.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 2.5e-08 64.3 35 77.1
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.1e-07 61.2 301 22.3


User provided reference genes

Program Settings