Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 8.4e-149 530.4 284 100.0
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 8.8e-138 493.8 282 94.3
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 6.3e-136 487.6 285 92.6
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.0e-134 482.6 285 91.2
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 5.7e-121 438.0 290 83.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.7e-120 435.3 293 82.3
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 4.8e-120 434.9 293 82.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.5e-118 428.3 284 80.3
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.7e-117 426.4 284 80.3
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 2.5e-116 422.5 284 80.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.5e-108 396.0 288 78.1
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 5.2e-106 388.3 292 75.7
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 7.7e-102 374.4 301 72.1
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 7.2e-100 367.9 287 72.5
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.6e-99 366.7 287 71.1
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-99 366.7 300 71.0
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 2.8e-99 365.9 292 71.2
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.4e-98 363.6 288 72.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.0e-98 362.5 300 70.0
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 5.2e-98 361.7 286 74.5
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 5.2e-98 361.7 288 72.2
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 6.8e-98 361.3 294 72.1
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.2e-97 360.5 295 71.2
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.0e-97 359.8 299 71.2
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 3.4e-97 359.0 298 69.5
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 4.4e-97 358.6 299 70.9
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 4.4e-97 358.6 295 69.2
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 5.7e-97 358.2 296 70.6
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 9.8e-97 357.5 287 71.4
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.7e-96 356.7 288 71.5
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.9e-96 355.9 305 68.9
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.7e-96 355.5 296 69.9
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.9e-96 355.1 306 69.0
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 1.8e-95 353.2 302 69.5
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.8e-95 353.2 292 70.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.4e-95 352.8 305 67.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.2e-95 352.4 301 69.4
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.1e-95 352.1 302 68.9
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.1e-95 352.1 299 68.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 7.0e-95 351.3 294 71.1
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 7.0e-95 351.3 302 68.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 9.2e-95 350.9 301 68.8
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-94 350.1 288 71.5
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.7e-94 349.4 289 71.3
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 2.7e-94 349.4 287 70.0
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.7e-94 349.4 296 68.6
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 5.9e-94 348.2 293 68.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 7.8e-94 347.8 294 68.4
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.3e-93 347.1 304 67.4
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.9e-93 345.5 293 68.9
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 3.9e-93 345.5 284 69.4
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.9e-93 345.5 216 83.8
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 6.6e-93 344.7 293 69.3
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 6.6e-93 344.7 302 67.2
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.1e-92 344.0 304 65.1
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.5e-92 343.6 291 69.1
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.5e-92 343.6 208 83.7
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.9e-92 343.2 293 68.6
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.5e-92 342.8 286 69.2
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.3e-92 342.4 292 68.2
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 3.3e-92 342.4 294 69.4
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.3e-92 342.0 293 67.6
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 5.6e-92 341.7 290 68.6
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 5.6e-92 341.7 295 69.2
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 9.5e-92 340.9 294 68.0
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.2e-91 340.5 302 66.6
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.1e-91 339.7 287 69.3
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.8e-91 339.3 285 68.1
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.8e-91 339.3 290 68.6
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 2.8e-91 339.3 300 68.0
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 2.8e-91 339.3 292 69.2
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 6.2e-91 338.2 293 67.9
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 6.2e-91 338.2 288 68.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.2e-91 338.2 293 66.6
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 8.0e-91 337.8 301 66.4
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.4e-90 337.0 285 69.5
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 5.2e-90 335.1 292 69.2
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 5.2e-90 335.1 297 66.0
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 6.8e-90 334.7 289 68.5
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 8.9e-90 334.3 289 67.5
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.5e-89 333.6 308 65.3
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.5e-89 333.6 291 68.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 9.8e-89 330.9 299 66.9
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.3e-88 330.5 285 68.1
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.2e-88 329.7 345 60.0
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.9e-88 329.3 291 66.7
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 8.3e-88 327.8 278 68.0
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.1e-87 327.4 289 67.8
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.4e-87 327.0 291 66.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.9e-87 326.6 287 66.9
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.4e-87 326.2 301 66.4
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.2e-87 325.9 298 65.1
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 5.4e-87 325.1 298 65.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 7.0e-87 324.7 286 66.4
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-86 322.8 249 71.1
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 4.6e-86 322.0 290 64.8
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.0e-85 320.9 274 65.7
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.7e-85 320.1 356 56.7
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 3.9e-85 318.9 271 65.7
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 5.0e-85 318.5 274 65.7
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 5.0e-85 318.5 308 61.0
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 8.6e-85 317.8 270 68.5
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 8.6e-85 317.8 300 62.7
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.1e-84 317.4 193 82.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 2.5e-84 316.2 300 64.0
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.3e-84 315.8 195 83.1
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 5.6e-84 315.1 274 65.3
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 5.6e-84 315.1 274 65.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.2e-83 313.9 305 60.7
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-83 313.9 279 63.8
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.2e-83 313.9 296 63.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 2.1e-83 313.2 299 62.5
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.1e-83 313.2 286 66.4
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 4.7e-83 312.0 295 63.1
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 6.2e-83 311.6 280 64.3
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 3.1e-82 309.3 280 64.3
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 4.0e-82 308.9 305 61.0
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 6.8e-82 308.1 301 62.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.9e-82 307.8 279 65.2
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.6e-81 306.2 280 64.3
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 5.8e-81 305.1 192 81.2
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.9e-80 302.8 274 65.7
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.4e-79 300.4 289 66.1
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-78 297.4 193 81.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.3e-77 293.9 197 77.7
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.1e-76 290.8 207 74.4
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.5e-76 289.7 199 76.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.5e-76 289.7 287 59.9
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.3e-76 288.9 327 56.3
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 3.1e-74 282.7 182 79.1
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 4.0e-74 282.3 272 63.2
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.9e-73 277.7 226 67.7
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.4e-72 274.6 204 71.6
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.9e-71 273.5 360 51.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 9.2e-71 271.2 287 56.1
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.6e-70 270.4 268 60.4
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.7e-70 269.6 216 68.1
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.8e-70 268.1 275 60.4
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 3.9e-69 265.8 255 60.8
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.1e-68 264.2 277 55.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.6e-67 260.4 242 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.8e-66 256.9 267 56.6
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.2e-65 254.2 232 64.2
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.0e-62 241.9 192 66.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.1e-55 221.1 181 61.9
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.0e-53 214.5 199 59.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 7.6e-49 198.4 192 57.3
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.3e-48 197.6 203 57.1
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.4e-47 194.1 193 59.1
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.5e-41 172.6 107 86.9
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 8.7e-37 158.3 279 41.6
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 6.9e-34 148.7 89 79.8
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 2.2e-32 143.7 269 38.7
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.9e-32 143.3 101 72.3
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 2.8e-27 126.7 101 72.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.4e-26 124.4 248 36.7
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.7e-24 117.5 78 80.8
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.7e-24 117.5 208 38.9
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.9e-23 114.0 164 47.6
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.6e-22 110.9 63 85.7
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 4.6e-22 109.4 63 84.1
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 6.7e-21 105.5 87 59.8
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.1e-15 88.2 181 37.0
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 2.2e-11 73.9 56 67.9


User provided reference genes

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