Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.4e-198 696.0 348 100.0
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.9e-167 591.3 348 86.5
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.3e-164 582.4 433 71.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 3.0e-164 582.0 357 82.6
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.0e-148 530.4 356 76.7
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 5.1e-140 501.5 359 71.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 3.3e-131 472.2 306 78.4
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 6.5e-127 458.0 322 72.7
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.2e-125 453.8 326 71.8
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.1e-125 453.0 322 72.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.1e-125 453.0 268 81.0
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 3.5e-120 435.6 343 67.1
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.4e-116 423.7 290 72.8
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.2e-112 410.6 282 72.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.5e-112 408.7 364 59.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 7.7e-112 407.9 321 64.8
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.0e-111 407.5 356 60.4
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 1.3e-111 407.1 280 70.4
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.8e-111 405.6 356 61.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 6.6e-111 404.8 356 61.0
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 6.6e-111 404.8 363 59.2
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 8.6e-111 404.4 309 67.0
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 8.6e-111 404.4 296 68.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.5e-110 403.7 330 64.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 4.3e-110 402.1 295 67.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 5.6e-110 401.7 360 60.0
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 5.6e-110 401.7 348 60.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 9.5e-110 401.0 358 60.1
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 9.5e-110 401.0 295 68.8
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.6e-109 400.2 263 72.2
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.8e-109 399.4 278 70.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.6e-109 399.1 348 59.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.1e-109 398.3 309 65.4
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 6.1e-109 398.3 272 71.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 8.0e-109 397.9 294 67.3
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 8.0e-109 397.9 288 68.1
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 8.0e-109 397.9 279 72.0
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 5.2e-108 395.2 308 62.7
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 6.8e-108 394.8 262 72.1
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.2e-107 394.0 272 70.2
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.5e-107 393.7 361 57.9
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.0e-107 393.3 323 62.8
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 3.4e-107 392.5 261 75.1
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 4.4e-107 392.1 264 71.2
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.3e-106 390.6 259 73.0
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.9e-106 389.4 260 72.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 4.9e-106 388.7 256 73.4
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 4.9e-106 388.7 302 66.6
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 6.4e-106 388.3 319 59.2
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 6.4e-106 388.3 360 57.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 8.3e-106 387.9 284 63.4
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.2e-105 386.0 272 69.1
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 3.2e-105 386.0 260 71.9
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 5.4e-105 385.2 310 60.3
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 5.4e-105 385.2 310 60.3
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 5.4e-105 385.2 264 70.5
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.0e-105 384.8 265 70.2
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 9.2e-105 384.4 351 57.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 9.2e-105 384.4 271 68.3
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 9.2e-105 384.4 283 69.3
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 9.2e-105 384.4 368 57.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.6e-104 383.6 266 66.9
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.7e-104 382.9 262 73.3
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.6e-104 382.1 263 73.0
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.9e-104 381.7 297 62.6
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.9e-104 381.7 267 69.3
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.3e-103 380.6 257 69.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-103 380.6 263 72.6
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.7e-103 380.2 259 69.9
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.3e-103 379.8 299 61.5
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 3.0e-103 379.4 279 64.5
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.0e-103 379.4 324 62.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.0e-103 379.4 269 70.6
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.0e-103 379.4 262 69.5
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 3.0e-103 379.4 342 57.9
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 8.6e-103 377.9 263 72.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.5e-102 376.3 279 66.3
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.3e-102 375.6 259 71.0
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 5.6e-102 375.2 297 63.6
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 5.6e-102 375.2 341 57.8
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 7.3e-102 374.8 299 60.9
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 9.5e-102 374.4 295 62.7
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.2e-101 374.0 264 69.7
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.6e-101 373.6 234 73.9
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.7e-101 372.1 342 56.4
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.4e-100 370.5 299 60.2
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 6.8e-100 368.2 248 72.6
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.2e-99 367.5 263 67.3
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.4e-99 365.9 313 56.5
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.8e-99 365.2 264 67.4
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.8e-99 365.2 260 66.2
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 7.5e-99 364.8 259 67.6
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 7.5e-99 364.8 264 67.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 7.5e-99 364.8 420 50.7
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 2.2e-98 363.2 210 81.9
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.2e-98 363.2 262 65.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 8.3e-98 361.3 264 66.3
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.4e-97 359.8 264 65.9
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.1e-94 350.9 249 69.5
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.1e-92 344.4 238 69.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 6.8e-92 341.7 212 75.5
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 6.4e-90 335.1 334 56.0
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.0e-87 327.8 301 52.5
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 8.6e-87 324.7 301 52.2
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.5e-86 323.9 291 54.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.4e-83 312.4 264 59.8
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 5.8e-83 312.0 228 68.0
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 7.8e-80 301.6 338 53.8
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.6e-79 298.5 200 70.5
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 3.6e-77 292.7 231 60.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.8e-74 282.7 268 54.9
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.5e-72 276.2 255 52.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 3.6e-69 266.2 208 59.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 4.4e-67 259.2 233 55.4
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.3e-63 247.7 229 52.8
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.8e-52 210.7 265 44.9
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 4.9e-50 202.6 214 48.1
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.5e-50 202.2 222 51.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.1e-48 197.2 119 78.2
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.1e-44 184.9 119 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.5e-38 163.7 160 53.8
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.5e-25 120.6 83 67.5
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.6e-24 117.9 72 81.9
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 4.5e-19 99.8 68 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.7e-18 97.8 160 39.4
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.5e-18 95.9 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.5e-18 95.9 61 72.1
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.0e-15 88.6 78 61.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 4.0e-15 86.7 148 35.1
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 9.7e-14 82.0 189 31.7
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 6.3e-13 79.3 189 31.2
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.4e-12 78.2 184 31.5
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.8e-12 77.8 131 35.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 3.1e-12 77.0 194 32.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.1e-12 77.0 210 28.1
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 3.1e-12 77.0 116 36.2
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.1e-12 76.6 131 35.9
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 5.3e-12 76.3 152 32.9
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 9.1e-12 75.5 131 33.6
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.1e-12 75.5 189 30.2
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 9.1e-12 75.5 131 35.1
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.2e-11 75.1 194 30.9
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.6e-11 74.7 131 34.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.0e-11 74.3 227 26.9
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.0e-11 74.3 130 34.6
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.0e-11 74.3 116 37.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.0e-11 74.3 131 34.4
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.7e-11 73.9 215 29.8
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.7e-11 73.9 116 34.5
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.7e-11 73.9 205 27.8
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 4.5e-11 73.2 147 32.0
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 4.5e-11 73.2 147 32.0
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.5e-11 73.2 116 34.5
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.5e-11 73.2 185 30.3
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 4.5e-11 73.2 197 29.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 5.9e-11 72.8 185 29.7
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.7e-10 71.2 185 30.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.7e-10 71.2 116 34.5
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.8e-10 70.1 218 28.0
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.8e-10 70.1 115 32.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.8e-10 70.1 186 29.6
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 8.5e-10 68.9 126 31.7
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 8.5e-10 68.9 192 29.2
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 8.5e-10 68.9 125 34.4
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 8.5e-10 68.9 137 31.4
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 5.5e-09 66.2 151 28.5
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.2e-09 65.9 251 25.5
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.6e-08 64.7 123 31.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.1e-08 64.3 190 27.9
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 3.6e-08 63.5 111 33.3
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.7e-08 63.2 59 54.2
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 4.7e-08 63.2 189 28.6
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 4.7e-08 63.2 107 31.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 6.1e-08 62.8 90 36.7
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 6.1e-08 62.8 123 32.5
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 8.8e-07 58.9 176 28.4
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.2e-06 58.5 96 36.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.6e-06 57.4 230 23.9
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 3.4e-06 57.0 129 31.8


User provided reference genes

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