Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.4e-236 820.8 402 100.0
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 3.8e-171 605.1 388 79.1
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.3e-138 495.7 382 65.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.4e-133 478.4 381 62.5
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 4.6e-116 422.2 377 57.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 7.1e-109 398.3 377 57.3
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.7e-107 393.7 327 60.6
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 9.9e-103 377.9 354 54.0
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 4.2e-101 372.5 370 51.9
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.2e-100 370.9 354 54.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.7e-100 369.8 377 53.1
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 7.9e-100 368.2 362 54.4
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.8e-99 367.1 358 52.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.9e-99 365.9 361 52.4
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 5.6e-98 362.1 362 51.4
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.6e-98 362.1 352 51.4
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 2.8e-97 359.8 349 51.9
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 3.6e-97 359.4 359 52.6
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 4.8e-97 359.0 326 54.9
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 3.1e-96 356.3 373 49.9
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.9e-96 355.1 351 51.9
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 9.0e-96 354.8 349 51.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 2.0e-95 353.6 368 50.3
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.2e-94 350.1 392 47.7
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.2e-94 350.1 357 50.7
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 3.8e-94 349.4 374 50.8
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.9e-93 347.1 367 49.0
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.2e-93 346.3 374 50.0
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 3.2e-93 346.3 355 50.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.2e-93 345.9 372 50.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 7.1e-93 345.1 381 48.6
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.2e-92 344.4 368 48.6
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.7e-92 343.2 353 50.1
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.5e-92 342.8 356 48.3
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.6e-92 342.4 366 49.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.0e-91 341.3 377 48.8
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.5e-90 337.4 377 46.7
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.6e-90 335.5 374 49.5
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.3e-89 334.3 377 47.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.1e-89 333.6 370 47.0
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.8e-89 333.2 355 49.0
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.1e-88 331.3 369 48.0
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.8e-88 330.5 354 49.4
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 3.1e-88 329.7 335 49.6
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 4.0e-88 329.3 371 47.2
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 4.0e-88 329.3 387 47.8
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.0e-88 329.3 360 48.9
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 5.3e-88 328.9 380 46.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 5.3e-88 328.9 355 48.7
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 6.9e-88 328.6 376 47.6
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.0e-87 327.0 355 48.5
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.0e-86 324.7 364 48.6
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.7e-86 323.9 364 48.4
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.7e-86 323.9 390 44.9
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 2.2e-86 323.6 368 47.8
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 8.4e-86 321.6 357 49.0
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 4.2e-85 319.3 357 47.6
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 9.3e-85 318.2 366 45.6
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.0e-83 314.7 370 44.3
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 3.0e-83 313.2 363 45.7
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 3.0e-83 313.2 398 45.7
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 3.0e-83 313.2 398 43.5
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.9e-82 310.5 410 42.4
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.5e-82 310.1 372 43.0
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 4.3e-82 309.3 333 48.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.7e-82 308.9 340 47.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 7.4e-82 308.5 301 51.5
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.8e-81 306.6 353 45.6
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 4.8e-81 305.8 348 47.4
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 7.6e-79 298.5 323 45.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.7e-78 297.4 271 53.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.7e-78 297.4 388 44.6
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 6.5e-78 295.4 373 44.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 6.5e-78 295.4 369 46.3
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.9e-77 293.9 383 43.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 3.0e-75 286.6 354 44.9
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 3.9e-75 286.2 318 46.9
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 5.1e-75 285.8 319 47.0
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.5e-74 283.5 299 52.5
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 5.7e-74 282.3 373 42.4
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 7.4e-74 282.0 299 48.5
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 7.4e-74 282.0 408 41.4
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 9.7e-74 281.6 322 47.8
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.3e-73 281.2 328 43.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.2e-73 280.4 356 43.3
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 3.7e-73 279.6 348 43.1
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 4.1e-72 276.2 352 43.8
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 5.3e-72 275.8 365 43.0
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 5.3e-72 275.8 301 46.5
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 5.3e-72 275.8 330 47.6
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 6.9e-72 275.4 344 42.7
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 3.4e-71 273.1 358 42.5
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 4.5e-71 272.7 348 42.8
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.2e-70 270.4 322 45.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.9e-70 270.0 324 45.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 3.8e-70 269.6 365 42.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.4e-69 267.7 271 51.7
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.4e-69 267.7 292 50.0
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.4e-69 267.7 228 61.8
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 3.2e-69 266.5 381 42.5
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 4.2e-69 266.2 301 45.8
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.2e-68 264.6 365 43.3
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.5e-66 257.7 231 51.1
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.0e-66 257.3 385 39.0
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.1e-64 251.5 336 40.8
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.9e-63 245.7 361 39.3
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.9e-62 243.4 297 44.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.1e-61 241.5 256 46.5
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.1e-61 241.5 297 43.8
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.2e-60 238.0 357 39.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 4.7e-60 236.1 349 39.5
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.8e-59 234.2 274 48.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.3e-59 233.8 200 54.0
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 4.4e-58 229.6 356 39.9
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 2.0e-55 220.7 326 39.6
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 3.5e-55 219.9 371 35.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.0e-51 208.4 203 49.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.4e-51 208.0 296 38.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 6.3e-49 199.1 182 49.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 2.2e-46 190.7 229 51.1
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.2e-45 185.7 263 43.7
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.6e-44 184.5 181 47.0
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.2e-41 174.1 156 50.6
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 7.8e-31 139.0 171 46.8
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 8.6e-30 135.6 221 42.1
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 4.4e-26 123.2 109 55.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.1e-24 118.6 91 54.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.7e-23 114.0 89 53.9
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 4.6e-23 113.2 104 46.2
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.9e-22 110.2 127 43.3
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.2e-20 105.1 108 47.2
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.8e-20 104.0 86 54.7
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-18 97.8 99 45.5
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-17 95.1 101 42.6
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.4e-17 92.8 91 53.8
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.5e-15 87.0 85 43.5
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.7e-14 84.7 91 53.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.9e-14 83.6 114 44.7
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 6.8e-11 72.8 116 44.0
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 6.0e-07 59.7 47 55.3
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 6.6e-06 56.2 42 59.5


User provided reference genes

Program Settings