Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.1e-126 455.7 225 100.0
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 4.8e-123 444.5 225 96.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 4.4e-116 421.4 225 92.0
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 6.3e-115 417.5 226 91.6
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 9.8e-108 393.7 225 84.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.3e-104 383.3 225 84.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 82.7
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 82.2
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 8.0e-102 374.0 232 80.6
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 80.9
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 77.3
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 77.3
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 77.8
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 77.3
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 76.4
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 76.0
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 75.1
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 76.0
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 76.9
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 5.6e-95 351.3 225 76.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 76.0
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.2e-94 350.1 225 74.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 74.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 74.7
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 73.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 72.9
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 73.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 73.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 75.1
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 75.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 73.3
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 74.7
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 73.8
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 73.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 74.2
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 74.2
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 72.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 7.5e-92 340.9 227 74.4
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 9.8e-92 340.5 225 73.8
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 74.7
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 73.8
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 72.9
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 8.3e-91 337.4 224 73.7
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.4e-90 335.9 226 71.7
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 73.8
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 72.9
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 72.9
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.4e-90 334.7 223 71.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 72.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 72.9
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 9.2e-90 334.0 226 73.5
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.6e-89 333.2 279 62.0
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-89 332.8 226 72.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-89 332.8 226 72.6
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 72.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 69.8
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 69.8
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.5e-89 332.0 225 70.7
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 72.0
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 72.4
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 69.3
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 70.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.0e-88 330.5 224 72.3
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 70.7
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 72.0
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 5.0e-88 328.2 225 73.3
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 5.0e-88 328.2 225 74.2
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 71.1
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 72.4
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 71.1
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.5e-87 325.9 225 72.9
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 5.6e-87 324.7 196 79.6
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 72.0
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 71.6
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 4.0e-85 318.5 225 70.7
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 6.8e-85 317.8 225 68.4
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 6.8e-85 317.8 226 68.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 8.9e-85 317.4 225 70.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.2e-84 317.0 225 70.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.2e-84 317.0 225 70.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.5e-84 316.6 225 67.6
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 2.0e-84 316.2 225 70.7
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 69.8
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 65.8
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 68.9
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.7e-83 313.2 260 62.3
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 3.7e-83 312.0 219 71.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 3.7e-83 312.0 225 65.8
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 6.4e-83 311.2 228 68.4
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.1e-82 310.5 196 75.5
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.1e-82 310.5 208 73.6
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.4e-82 309.3 225 66.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 7.1e-82 307.8 226 67.3
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 7.1e-82 307.8 225 63.6
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.2e-81 307.0 266 59.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 4.6e-81 305.1 243 65.0
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 66.7
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 2.1e-78 296.2 225 67.6
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 3.6e-78 295.4 225 66.2
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 8.1e-78 294.3 225 64.0
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.8e-77 293.1 227 63.4
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.8e-77 293.1 227 63.0
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.2e-76 290.4 225 64.4
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.1e-73 279.6 219 63.0
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 7.8e-73 277.7 225 64.0
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.3e-72 276.9 228 61.4
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 5.1e-72 275.0 225 60.0
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.1e-71 273.9 225 63.1
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.9e-71 273.1 177 74.6
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 3.1e-69 265.8 210 62.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.9e-67 259.2 227 58.1
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 9.3e-66 254.2 225 60.0
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.3e-64 250.4 174 69.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 3.9e-64 248.8 225 60.9
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.9e-63 246.5 226 55.3
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 2.8e-62 242.7 229 59.4
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-60 237.3 252 52.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-60 237.3 252 52.8
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.4e-60 235.7 225 53.3
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 4.6e-57 225.3 249 52.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.5e-52 210.3 167 65.3
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.8e-52 208.4 225 48.4
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 6.4e-51 204.9 225 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 7.4e-47 191.4 201 48.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-46 189.5 122 71.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 6.5e-43 178.3 227 43.6
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.5e-42 176.4 225 42.7
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 3.3e-39 166.0 226 41.6
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 3.4e-36 156.0 130 63.1
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 2.2e-35 153.3 146 56.8
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-33 146.7 100 68.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.5e-33 146.0 100 68.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.0e-28 130.2 150 48.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.5e-23 113.2 71 71.8
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.4e-18 97.4 63 65.1
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 6.1e-17 92.0 105 49.5
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.4e-16 90.9 122 44.3
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 3.0e-16 89.7 78 56.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-14 83.6 51 74.5
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-14 82.8 51 72.5
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-14 82.8 51 72.5
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-14 81.6 51 72.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.1e-13 79.3 79 51.9
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 5.3e-13 79.0 97 48.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 4.2e-10 69.3 37 83.8
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 9.4e-10 68.2 207 30.0
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.2e-09 67.8 51 68.6
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.1e-09 65.5 49 69.4
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.6e-07 60.1 51 54.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 2.8e-06 56.6 68 50.0


User provided reference genes

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