Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 9.9e-161 570.1 291 100.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.1e-150 535.8 292 93.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.2e-142 510.0 296 89.5
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.1e-131 472.6 272 90.1
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 6.9e-130 467.6 295 81.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.7e-125 450.7 296 80.1
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 7.4e-124 447.6 300 76.7
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 3.1e-122 442.2 292 78.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.5e-121 438.3 296 77.7
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 8.4e-120 434.1 297 76.8
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.4e-119 433.3 274 81.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.4e-119 433.3 292 78.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.4e-119 433.3 292 78.4
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.4e-119 433.3 297 76.8
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 3.2e-119 432.2 274 81.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 7.1e-119 431.0 295 76.3
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.7e-118 429.1 298 76.8
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.5e-118 428.7 298 75.2
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.5e-118 428.7 304 74.7
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 7.9e-118 427.6 304 74.0
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.0e-117 427.2 302 75.2
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 5.1e-117 424.9 284 77.1
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.1e-117 424.9 297 75.1
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.5e-116 422.5 299 73.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-115 420.2 297 73.1
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 8.2e-115 417.5 298 75.2
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.2e-115 417.5 298 75.2
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.1e-114 417.2 276 77.9
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.4e-114 416.8 293 73.4
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.4e-114 416.8 303 73.6
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.8e-114 416.4 298 75.2
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.8e-114 416.4 295 74.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 6.9e-114 414.5 293 72.4
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.2e-113 413.7 285 76.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-113 413.3 276 76.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 2.6e-113 412.5 263 79.8
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 5.9e-113 411.4 286 74.5
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 7.7e-113 411.0 291 73.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 2.9e-112 409.1 299 71.9
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.8e-112 408.7 275 77.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.4e-111 406.8 305 70.5
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-111 406.4 302 69.9
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.9e-111 406.4 288 75.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.2e-111 405.6 317 70.0
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.2e-110 403.7 297 70.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-110 403.3 256 78.1
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.1e-110 402.9 293 70.6
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-110 402.9 298 71.1
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-110 402.5 304 69.4
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-110 402.5 304 69.4
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 3.6e-110 402.1 296 69.9
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 4.6e-110 401.7 333 65.8
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 6.1e-110 401.4 322 67.7
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-109 400.2 299 69.9
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.4e-109 400.2 299 69.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.4e-109 400.2 281 73.3
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.8e-109 399.8 297 69.7
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.8e-109 399.8 289 70.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.8e-109 399.8 286 71.7
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.3e-109 399.4 299 70.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 3.0e-109 399.1 273 75.5
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 6.7e-109 397.9 286 71.3
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 8.8e-109 397.5 297 69.4
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 8.8e-109 397.5 299 68.9
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.1e-108 397.1 286 71.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.5e-108 396.0 298 68.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 3.3e-108 395.6 276 72.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 3.3e-108 395.6 276 72.1
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.3e-108 395.2 299 68.6
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.4e-108 394.4 289 68.9
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 9.7e-108 394.0 297 68.4
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.2e-107 392.9 268 75.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 3.7e-107 392.1 273 72.5
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.1e-106 390.6 319 68.3
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.4e-106 389.4 287 72.8
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.1e-106 389.0 276 71.7
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 4.1e-106 388.7 289 70.2
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-105 385.6 259 73.4
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-105 385.6 259 74.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.5e-105 385.2 248 76.6
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.5e-103 379.4 298 69.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.5e-103 379.4 262 71.4
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.2e-103 379.0 301 69.1
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 3.2e-103 379.0 288 70.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 3.2e-103 379.0 288 70.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.5e-103 378.3 276 69.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 9.4e-103 377.5 300 66.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.6e-102 376.7 295 67.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.1e-102 376.3 265 71.3
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.1e-102 376.3 275 72.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.7e-102 375.9 297 67.7
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.0e-101 374.0 274 70.8
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.0e-101 374.0 316 64.2
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.4e-101 373.6 304 65.5
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-100 370.5 265 70.2
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.5e-100 370.2 275 68.7
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.3e-99 367.1 296 64.9
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.8e-99 365.9 308 64.3
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.8e-99 365.9 293 66.9
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 4.8e-99 365.2 279 65.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 8.2e-99 364.4 279 65.9
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.1e-98 362.5 235 74.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 7.0e-98 361.3 301 65.1
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 9.1e-98 360.9 263 70.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.7e-96 356.7 287 65.2
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 6.5e-96 354.8 294 66.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 2.5e-95 352.8 267 69.3
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 9.4e-95 350.9 251 72.1
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.2e-94 350.5 230 74.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.4e-93 347.1 293 61.4
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.3e-91 340.5 254 66.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.4e-90 337.0 256 69.1
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.6e-89 333.6 304 60.2
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.2e-88 329.7 255 65.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.1e-86 323.2 281 61.9
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.0e-85 318.9 277 60.6
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.7e-85 318.2 250 67.2
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 9.7e-84 314.3 257 62.6
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 7.7e-81 304.7 258 60.9
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.0e-80 304.3 179 86.0
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.4e-77 293.9 240 60.8
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.6e-76 289.7 273 56.8
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.4e-76 289.3 297 53.9
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.4e-76 289.3 212 75.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.8e-75 285.4 300 52.0
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-74 283.9 296 51.7
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.0e-69 265.8 282 52.8
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.7e-67 259.2 193 69.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.1e-62 243.4 215 58.6
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.3e-61 240.0 142 81.7
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.0e-61 239.2 241 54.8
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.7e-57 226.5 142 77.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.7e-56 223.8 142 73.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.0e-52 210.3 114 90.4
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-51 207.6 182 61.0
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.8e-49 198.4 240 45.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 8.6e-48 194.9 129 73.6
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.5e-47 194.1 114 82.5
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-42 177.6 156 59.0
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.5e-41 172.9 208 48.6
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 7.8e-41 171.8 232 45.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.2e-34 149.8 129 61.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 9.3e-34 148.3 263 38.4
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.6e-33 147.5 212 42.5
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.5e-31 140.2 84 79.8
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 6.0e-25 119.0 82 68.3
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-24 117.9 157 49.7
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-23 114.4 86 62.8
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 4.8e-22 109.4 184 37.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.1e-22 108.6 59 83.1
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.1e-21 106.7 72 69.4
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.5e-20 102.8 194 40.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-18 96.7 50 92.0
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 6.0e-17 92.4 133 47.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.0e-16 91.7 62 69.4
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 5.1e-16 89.4 270 27.0
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 1.3e-14 84.7 169 33.7
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.4e-12 76.6 154 27.3
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 4.5e-12 76.3 169 27.2
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.4e-10 71.2 142 27.5
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 4.2e-10 69.7 156 28.8
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 3.9e-08 63.2 40 75.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 3.9e-08 63.2 40 75.0
Lsat_1_v5_gn_5_154461 Lactuca sativa HOM05D000951 ORTHO05D001597 3.7e-06 56.6 208 26.0


User provided reference genes

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