Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 7.6e-239 830.1 418 100.0
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.5e-207 726.1 418 88.3
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 2.5e-205 718.8 418 87.8
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 2.2e-201 705.7 413 83.8
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 8.2e-201 703.7 420 82.9
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.5e-199 699.5 420 82.4
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.2e-198 695.7 418 82.8
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 2.5e-197 692.2 418 82.3
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 7.9e-196 687.2 405 84.2
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 1.1e-194 683.3 413 81.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.3e-190 669.8 468 75.9
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 5.2e-179 631.3 409 76.3
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 7.0e-176 620.9 420 73.8
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 2.2e-174 615.9 414 73.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 2.2e-174 615.9 440 71.4
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 5.0e-174 614.8 418 73.2
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.5e-173 612.5 420 72.9
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.5e-173 612.5 420 72.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.6e-172 609.8 427 71.9
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 3.7e-169 598.6 416 71.6
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 7.0e-168 594.3 416 71.6
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 3.5e-167 592.0 407 71.3
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 4.5e-167 591.7 405 72.1
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 5.9e-167 591.3 416 71.6
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 7.7e-167 590.9 407 71.5
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.0e-166 590.5 407 72.0
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 1.3e-166 590.1 414 68.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 2.3e-166 589.3 413 72.4
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 2.9e-166 589.0 414 71.5
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 6.6e-166 587.8 416 70.9
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.5e-165 586.6 418 70.8
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.3e-165 585.5 418 70.6
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.3e-165 585.5 418 70.8
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 5.6e-165 584.7 420 70.0
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 4.7e-164 581.6 415 68.7
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.0e-162 576.2 416 69.2
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 3.4e-162 575.5 418 68.9
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 4.4e-162 575.1 421 68.9
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 1.3e-161 573.5 418 68.2
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.2e-161 572.8 408 70.1
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.9e-161 572.4 415 68.9
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 4.9e-161 571.6 416 66.6
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 1.1e-160 570.5 407 68.1
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.4e-160 570.1 415 68.7
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.4e-160 570.1 403 70.0
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 5.4e-160 568.2 407 67.1
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 7.0e-160 567.8 416 66.1
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 2.7e-159 565.8 422 66.1
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 4.6e-159 565.1 416 66.3
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 5.9e-159 564.7 407 68.3
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 1.0e-158 563.9 409 67.7
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.3e-158 563.5 414 68.1
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 3.0e-158 562.4 424 67.7
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 3.9e-158 562.0 416 66.3
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 1.5e-157 560.1 418 67.5
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 5.6e-157 558.1 413 67.6
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 7.3e-157 557.8 407 68.8
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 9.5e-157 557.4 411 68.9
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 1.0e-155 553.9 445 62.2
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.4e-155 553.5 410 66.8
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-155 553.5 461 64.0
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 1.8e-155 553.1 445 62.2
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 3.1e-155 552.4 411 67.9
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 6.8e-155 551.2 445 62.5
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.2e-154 550.4 417 66.7
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 2.0e-154 549.7 410 66.3
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 2.6e-154 549.3 417 64.5
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 2.6e-154 549.3 462 61.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 3.4e-154 548.9 426 64.6
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 4.4e-154 548.5 415 66.7
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 9.2e-152 540.8 414 65.9
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 6.0e-151 538.1 455 62.2
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.5e-149 532.7 416 63.9
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 3.3e-149 532.3 461 60.7
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 1.2e-148 530.4 409 65.5
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.0e-146 523.1 382 70.2
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.9e-145 519.2 448 61.8
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 7.1e-144 514.6 443 59.8
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 2.1e-143 513.1 334 74.6
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 2.8e-140 502.7 408 64.0
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 4.7e-140 501.9 420 61.7
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 1.4e-139 500.4 407 63.4
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.8e-139 500.0 422 60.2
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 3.1e-139 499.2 408 63.5
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.2e-139 498.4 441 61.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.3e-137 493.8 408 62.7
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 8.4e-137 491.1 484 56.2
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.1e-136 490.7 416 62.3
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 7.1e-136 488.0 456 55.3
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.6e-135 486.9 346 71.1
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.6e-135 485.3 446 57.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 6.0e-135 485.0 409 57.9
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 8.6e-134 481.1 411 59.6
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 2.0e-130 469.9 360 65.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 4.6e-127 458.8 298 75.8
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.5e-125 453.8 424 55.4
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 7.6e-122 441.4 264 82.2
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.4e-115 420.6 328 66.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.4e-115 420.6 411 55.5
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.1e-111 406.8 289 70.6
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 8.7e-110 401.4 239 84.9
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 3.0e-102 376.3 285 65.3
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 6.3e-100 368.6 412 51.2
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 1.7e-97 360.5 419 47.3
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.9e-96 357.1 380 52.1
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.2e-96 356.3 382 50.3
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.8e-89 332.8 218 76.6
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 7.9e-87 325.1 318 56.0
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.1e-85 321.2 263 62.4
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.0e-85 320.5 215 75.3
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 3.7e-84 316.2 242 63.6
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.4e-78 297.7 310 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 3.9e-78 296.2 363 45.7
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 1.7e-76 290.8 294 52.0
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.5e-72 276.9 361 47.4
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 9.4e-64 248.4 225 59.1
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 7.0e-59 232.3 404 36.9
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 2.3e-57 227.3 166 68.1
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 4.7e-55 219.5 144 75.0
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 5.4e-51 206.1 125 79.2
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.0e-51 205.7 137 70.1
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 7.0e-51 205.7 152 67.1
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.2e-47 194.9 179 57.0
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 7.8e-42 175.6 409 33.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.9e-40 171.0 306 35.6
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 2.1e-34 151.0 88 83.0
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 6.6e-33 146.0 100 77.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.1e-32 145.2 106 72.6
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 3.6e-31 140.2 101 63.4
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 4.9e-28 129.8 148 48.6
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 2.8e-23 114.0 359 27.6
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.4e-21 106.7 207 32.9
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.3e-17 95.1 94 51.1
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.7e-17 94.7 113 53.1
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.6e-17 92.8 98 53.1
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 1.8e-14 84.7 54 74.1
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 4.0e-14 83.6 79 53.2


User provided reference genes

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