Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 0.0e+00 1090.1 526 100.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 2.1e-294 1015.0 531 92.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 3.0e-285 984.6 533 88.0
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 7.0e-282 973.4 533 87.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.3e-267 926.0 528 82.6
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 2.8e-267 924.9 528 81.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.2e-266 921.4 528 82.0
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.1e-263 912.9 522 81.8
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 5.6e-263 910.6 516 83.7
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 2.9e-259 898.3 528 80.5
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.1e-254 882.1 536 78.4
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.3e-251 872.8 490 84.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 6.2e-246 854.0 594 71.0
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 2.4e-234 815.5 522 73.4
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.9e-231 805.8 530 71.7
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.8e-230 802.0 523 72.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.6e-230 801.6 518 71.6
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 3.6e-230 801.6 526 71.3
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 4.8e-230 801.2 518 71.0
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 4.8e-230 801.2 522 71.1
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 8.1e-230 800.4 518 71.4
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.4e-229 798.9 518 71.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.4e-229 798.9 515 71.1
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 3.8e-227 791.6 522 69.5
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.4e-226 789.6 519 69.6
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.4e-226 788.9 519 70.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.4e-226 788.9 519 69.2
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.2e-226 788.1 545 69.0
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.6e-225 786.2 515 70.1
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.1e-225 785.8 516 70.5
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 2.1e-225 785.8 530 69.1
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.1e-225 785.8 516 69.2
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.5e-225 785.0 521 69.3
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.6e-225 784.6 530 68.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.3e-224 783.1 543 68.1
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.3e-224 782.3 518 70.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.9e-224 781.6 522 68.6
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 8.7e-224 780.4 515 70.5
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.1e-221 771.9 526 67.3
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 6.9e-221 770.8 528 65.0
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.5e-220 769.6 518 68.5
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.6e-220 768.8 519 68.4
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 3.4e-220 768.5 530 66.8
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 5.8e-220 767.7 525 65.1
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.2e-219 765.8 522 65.5
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.9e-219 765.4 528 64.4
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.9e-218 762.7 529 66.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.2e-218 761.9 535 67.3
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.6e-217 759.6 535 66.7
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.6e-217 759.6 536 67.4
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 4.6e-217 758.1 514 67.7
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.0e-216 756.9 514 68.3
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.3e-216 755.7 530 67.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.1e-215 753.4 525 64.2
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.9e-215 752.7 482 70.5
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.5e-215 752.3 528 64.8
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 3.3e-215 751.9 514 67.5
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.3e-215 751.5 521 67.4
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.6e-215 751.1 523 64.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 5.6e-215 751.1 523 64.8
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.8e-214 748.8 514 67.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.1e-213 746.9 521 67.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.1e-213 745.3 517 65.2
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 3.1e-213 745.3 517 65.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 4.0e-213 745.0 517 65.4
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 4.0e-213 745.0 517 64.8
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.5e-212 743.0 528 64.6
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.2e-211 739.2 514 67.1
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.4e-210 736.5 470 70.9
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.7e-209 732.3 498 67.1
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.5e-209 731.9 541 62.3
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 3.5e-209 731.9 511 66.9
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.8e-208 729.6 542 61.8
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.7e-207 724.5 521 66.4
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.1e-205 720.3 563 61.5
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.9e-200 701.8 526 62.2
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.3e-199 698.4 522 63.8
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.6e-198 696.4 518 62.5
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 5.3e-197 691.4 517 62.1
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.2e-196 690.3 593 59.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 5.0e-195 684.9 526 61.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.4e-192 676.8 516 64.3
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.3e-192 676.0 521 59.3
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 2.3e-192 676.0 523 61.4
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 5.7e-191 671.4 695 50.1
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.3e-190 670.2 440 70.7
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.3e-187 660.2 397 74.8
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.8e-187 658.7 520 63.5
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.8e-184 649.8 435 68.5
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.3e-183 645.6 542 60.1
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-182 643.7 577 57.4
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 6.3e-182 641.3 391 73.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.1e-178 630.6 504 61.1
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.0e-176 624.0 494 61.7
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 9.7e-175 617.5 522 58.0
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 4.8e-174 615.1 419 66.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.7e-169 599.4 535 53.8
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.1e-165 587.4 491 60.7
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 2.2e-158 563.1 531 51.0
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.1e-157 560.8 505 54.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.1e-157 557.8 362 71.3
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.0e-151 540.0 332 75.0
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.3e-146 522.3 523 53.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.9e-142 508.8 304 76.3
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.0e-140 503.4 348 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.1e-137 493.4 435 54.0
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.4e-135 486.1 549 44.3
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.6e-132 477.2 518 48.6
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 5.2e-128 462.2 283 74.9
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.2e-126 456.8 342 64.3
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.3e-123 447.6 357 61.6
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.1e-120 436.4 228 89.0
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-118 429.9 252 76.6
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.7 228 79.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.7 228 79.8
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 5.4e-109 399.1 286 66.8
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.6e-108 397.5 230 77.4
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.1e-80 303.1 521 36.3
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 5.5e-77 292.7 165 77.6
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.0e-75 287.0 539 34.1
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.1e-75 286.2 206 62.6
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.7e-73 280.0 206 61.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 8.2e-73 278.9 522 33.9
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.4e-72 277.3 584 33.0
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 3.0e-67 260.4 169 71.0
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.9e-67 260.0 228 56.6
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 6.7e-67 259.2 495 33.7
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 5.3e-56 223.0 190 56.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.7e-55 219.2 365 40.8
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 9.1e-48 195.7 262 42.4
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 6.1e-36 156.4 171 46.8
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 8.9e-35 152.5 85 74.1
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.0e-34 151.4 337 32.0
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.5e-31 140.6 140 53.6
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.1e-29 135.6 99 62.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.9e-29 134.8 103 61.2
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.8e-28 131.0 79 75.9
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.2e-28 129.8 194 39.2
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.1e-24 119.0 119 50.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 9.2e-24 115.9 102 55.9
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-23 115.5 85 62.4
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.2e-15 89.0 270 28.9
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.9e-13 81.6 41 78.0
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.3e-13 80.9 116 40.5
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.2e-11 73.6 99 41.4
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 7.6e-10 69.7 51 60.8
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.7e-09 68.6 80 46.2
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.0e-06 59.3 62 41.9


User provided reference genes

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