Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.2e-71 272.3 153 100.0
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 8.2e-66 253.8 154 94.2
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 5.2e-36 154.8 153 58.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 2.4e-33 146.0 153 64.7
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 5.9e-32 141.4 152 52.0
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.4e-28 130.2 150 50.7
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 3.1e-28 129.0 155 50.3
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 3.4e-27 125.6 149 51.7
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 1.4e-25 120.2 149 56.4
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.1e-22 110.5 77 64.9
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 6.6e-15 84.7 62 59.7
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 2.5e-14 82.8 73 54.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 7.3e-14 81.3 62 56.5
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 9.5e-14 80.9 58 58.6
Lj5g0000209 Lotus japonicus HOM05D007757 ORTHO05D009619 1.2e-13 80.5 69 58.0
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 1.2e-13 80.5 62 56.5
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 2.8e-13 79.3 62 54.8
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 8.1e-13 77.8 62 53.2
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.1e-12 77.4 146 34.9
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 1.4e-12 77.0 76 47.4
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.8e-12 76.6 55 54.5
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.3e-12 76.3 62 56.5
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 4.0e-12 75.5 48 62.5
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 8.9e-12 74.3 62 53.2
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 8.9e-12 74.3 73 46.6
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 1.5e-11 73.6 66 51.5
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 1.5e-11 73.6 71 49.3
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 2.6e-11 72.8 63 50.8
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 2.6e-11 72.8 48 60.4
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 3.4e-11 72.4 74 45.9
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 3.4e-11 72.4 53 58.5
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 5.8e-11 71.6 70 48.6
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 5.8e-11 71.6 70 48.6
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 3.8e-10 68.9 48 56.2
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 4.9e-10 68.6 73 45.2
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 8.4e-10 67.8 48 60.4
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 8.4e-10 67.8 48 60.4
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 1.4e-09 67.0 62 53.2
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.4e-09 66.2 54 53.7
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 4.1e-09 65.5 45 55.6
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 4.1e-09 65.5 41 63.4
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.2e-08 63.9 44 54.5
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.2e-08 63.9 44 54.5
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 1.2e-08 63.9 44 54.5
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 1.6e-08 63.5 69 46.4
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 2.1e-08 63.2 45 53.3
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 63.2 45 53.3
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 63.2 45 53.3
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 2.1e-08 63.2 45 53.3
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 2.1e-08 63.2 48 54.2
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.1e-08 63.2 45 53.3
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 2.7e-08 62.8 43 55.8
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.7e-08 62.8 59 49.2
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 2.7e-08 62.8 64 50.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 4.6e-08 62.0 45 51.1
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 6.0e-08 61.6 44 52.3
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 6.0e-08 61.6 44 52.3
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 7.8e-08 61.2 43 51.2
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 7.8e-08 61.2 51 54.9
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 7.8e-08 61.2 51 54.9
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 7.8e-08 61.2 51 54.9
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 1.3e-07 60.5 149 34.2
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.3e-07 60.5 50 50.0
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.7e-07 60.1 70 40.0
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.3e-07 59.7 59 47.5
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 3.0e-07 59.3 43 51.2
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 3.0e-07 59.3 43 51.2
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 3.9e-07 58.9 45 55.6
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 3.9e-07 58.9 56 50.0
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 3.9e-07 58.9 68 38.2
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.1e-07 58.5 70 40.0
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 6.6e-07 58.2 43 55.8
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 2.5e-06 56.2 58 46.6
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 3.3e-06 55.8 49 46.9
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 3.3e-06 55.8 43 51.2
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 5.6e-06 55.1 56 42.9
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 5.6e-06 55.1 56 42.9
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 5.6e-06 55.1 56 42.9
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 5.6e-06 55.1 56 42.9
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 5.6e-06 55.1 56 42.9


User provided reference genes

Program Settings