Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 3023.8 1650 100.0
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 2389.4 1651 81.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 0.0e+00 2107.0 1628 75.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 2055.4 1672 70.8
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1993.0 1667 69.2
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1404.0 1692 53.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1305.8 1703 51.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 1281.2 1714 50.5
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1234.6 1725 48.9
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1221.8 1701 50.2
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1218.0 1707 49.8
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1158.7 1778 47.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 1.8e-307 1060.1 1738 44.4
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 3.9e-262 909.4 1543 42.9
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 7.3e-160 569.7 1862 33.1
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.6e-149 534.6 1856 32.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.0e-137 496.1 1829 32.5
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-124 452.2 1953 31.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.9e-123 448.7 1867 30.5
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 9.3e-123 446.4 1781 31.4
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.3e-116 426.0 1839 30.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.2e-116 425.2 1782 31.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.0e-105 388.3 1724 29.1
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.2e-95 355.5 1875 27.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.4e-94 352.1 1755 29.9
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.6e-93 348.6 1842 28.0
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 7.7e-93 347.1 1779 29.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.5e-91 342.8 1884 29.4
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 9.4e-91 340.1 1778 29.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 2.7e-90 338.6 1770 29.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.7e-87 329.3 1794 27.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 7.7e-85 320.5 1940 28.9
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.2e-83 313.9 1916 28.5
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 9.4e-83 313.5 1735 27.2
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.5e-80 306.2 1866 27.3
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.4e-80 304.7 1672 27.4
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.3e-79 303.1 1801 27.7
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.2e-75 288.1 1840 26.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.1e-74 285.8 1670 27.8
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.7e-74 285.4 1788 27.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.4e-73 283.1 1928 26.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.8e-73 282.7 1667 27.4
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 8.8e-73 280.4 1718 26.4
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.0e-72 279.3 1663 27.1
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.4e-72 278.1 1664 27.3
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.5e-72 277.3 1803 27.8
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 9.8e-72 276.9 1881 25.5
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.3e-71 274.2 1813 27.4
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-69 269.6 1701 28.6
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 2.7e-69 268.9 372 45.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.5e-67 263.1 1792 27.6
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.3e-65 255.8 1698 26.9
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.7e-63 248.4 329 49.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.9e-63 248.1 2027 25.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.8e-62 246.1 1742 26.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.2e-62 245.4 464 43.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.1e-62 245.0 1865 26.3
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.2e-62 243.8 1707 26.1
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.3e-60 240.0 1064 31.8
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 5.6e-59 234.6 1830 26.1
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 7.3e-59 234.2 874 29.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.2e-58 233.4 610 34.6
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.4e-57 229.9 677 37.5
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.3e-57 229.2 1761 24.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 4.0e-57 228.4 1750 25.8
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 8.9e-57 227.3 1747 27.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.0e-56 226.1 1769 26.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.0e-56 226.1 2080 25.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 3.5e-53 215.3 1685 25.3
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 3.5e-53 215.3 1835 25.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.0e-52 213.8 669 36.3
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.0e-52 212.2 2053 25.1
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.0e-52 211.5 1866 25.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 6.6e-52 211.1 669 35.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.3e-51 208.8 732 35.1
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.1e-49 203.8 333 43.2
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.1e-49 203.8 461 35.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 4.0e-49 201.8 1778 26.2
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-46 192.2 495 41.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 3.5e-45 188.7 1774 24.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-44 186.0 1851 25.5
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.0e-44 185.7 1849 25.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.2e-41 174.9 1861 24.7
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 6.8e-41 174.5 1585 27.1
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.2e-40 173.7 178 57.3
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.4e-40 172.2 830 30.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 5.8e-40 171.4 1777 26.5
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.4e-38 166.8 664 37.0
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.1e-38 165.2 710 32.5
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.2e-37 163.7 1823 26.0
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.6e-37 163.3 1979 24.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.5e-37 162.2 457 41.8
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 4.6e-37 161.8 1850 25.7
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 4.6e-37 161.8 487 35.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.3e-36 160.2 643 35.0
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 5.1e-36 158.3 426 33.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.5e-35 156.8 1829 25.3
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.3e-35 155.6 620 30.2
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 8.1e-34 151.0 623 33.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.4e-33 149.4 1800 26.7
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.2e-32 147.1 1828 24.6
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 5.8e-32 144.8 706 33.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 4.9e-31 141.7 1885 25.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.4e-30 140.2 518 35.7
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 4.2e-30 138.7 277 35.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.3e-28 133.7 1752 22.9
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.3e-28 132.9 651 33.5
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.9e-28 132.1 681 34.5
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 8.7e-28 131.0 600 34.0
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.3e-27 129.0 561 27.5
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 5.6e-27 128.3 1844 24.2
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 9.6e-27 127.5 1789 24.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 5.8e-24 118.2 673 33.7
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.3e-23 117.1 665 33.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.2e-23 116.3 587 26.2
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 6.4e-23 114.8 661 33.4
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.9e-20 105.5 340 30.0
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 9.0e-17 94.4 265 45.7
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.0e-16 93.2 110 47.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.4e-16 92.4 640 31.1
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.5e-16 92.0 188 36.2
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.8e-16 91.7 584 30.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.9e-16 90.9 455 25.7
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 8.4e-15 87.8 88 60.2
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 7.1e-14 84.7 640 23.4
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-11 77.0 179 29.1
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.9e-11 76.6 140 46.4
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 4.3e-11 75.5 406 33.0
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 5.6e-11 75.1 110 44.5
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.6e-10 73.6 78 46.2
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.7e-10 72.4 444 29.1
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.1e-09 69.3 255 27.1
Medtr8g465700 Medicago truncatula HOM05D000451 ORTHO05D000351 3.1e-09 69.3 110 40.0
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.3e-09 68.6 64 56.2
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 9.0e-09 67.8 553 26.0
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 3.4e-08 65.9 266 28.9
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.3e-07 63.9 51 70.6
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.2e-07 63.2 134 34.3
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 3.8e-07 62.4 135 33.3
Psat7g120880 Pisum sativum HOM05D000120 ORTHO05D030268 4.9e-07 62.0 48 68.8
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 2.5e-06 59.7 64 48.4
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 4.2e-06 58.9 59 61.0
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 5.5e-06 58.5 253 28.9


User provided reference genes

Program Settings