Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 2473.7 1267 100.0
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2343.5 1268 94.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2248.8 1268 90.6
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2246.5 1268 90.7
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2143.6 1263 85.9
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2107.0 1264 84.7
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2057.3 1262 82.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 2050.8 1259 81.9
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2047.7 1260 82.4
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2028.8 1331 79.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 2020.7 1324 79.3
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2010.0 1260 81.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1995.3 1268 80.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1994.5 1265 79.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1837.8 1262 74.6
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1825.1 1262 74.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1809.3 1261 73.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1808.1 1265 73.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1801.9 1257 73.2
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1800.4 1261 72.9
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1795.0 1262 72.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1793.9 1269 73.4
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1789.2 1265 71.9
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1788.9 1267 72.8
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1788.1 1255 74.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1781.1 1271 72.0
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1778.8 1272 71.9
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1777.7 1272 71.8
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1775.0 1287 71.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1769.2 1262 72.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1768.1 1257 72.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1765.0 1262 72.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1753.0 1268 71.2
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1751.9 1261 71.3
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1734.9 1264 70.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1716.4 1324 68.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1716.0 1264 68.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1708.7 1265 69.9
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1706.0 1266 68.6
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1701.0 1288 70.6
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1698.3 1269 69.3
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1265 68.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1695.6 1270 69.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1692.6 1263 68.2
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1692.2 1256 69.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1691.4 1256 68.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1689.5 1262 68.2
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1680.6 1269 69.0
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1675.2 1259 67.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1673.3 1260 68.2
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1670.6 1296 66.8
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1266 68.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1666.4 1257 68.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1663.3 1269 66.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1262 67.4
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1660.2 1269 67.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1657.1 1262 66.9
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1254 67.3
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1656.3 1186 72.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1655.6 1269 67.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1259 67.5
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1644.0 1267 67.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1257 67.3
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1637.9 1269 67.3
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1311 65.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1635.2 1268 67.1
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1629.8 1267 67.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1625.5 1266 66.9
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1624.0 1259 66.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1617.4 1268 66.1
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1616.7 1187 69.8
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1265 67.0
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1614.4 1313 64.6
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1613.2 1257 66.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1606.7 1245 67.1
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1595.9 1269 66.2
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1257 66.7
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1594.7 1253 66.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1594.3 1257 66.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1259 65.5
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1554.3 1257 65.6
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1541.9 1297 63.0
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1539.2 1267 63.8
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1190 66.6
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1517.3 1188 67.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1259 63.2
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1502.6 1215 65.1
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1468.4 1174 64.4
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1468.0 1024 72.9
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1453.0 1012 73.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1442.9 1267 60.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1441.0 1258 59.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1414.8 1290 58.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1407.5 1255 59.2
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1392.5 1259 58.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1290.4 1042 65.0
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1183.3 889 67.8
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1157.1 1265 52.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1156.4 1253 49.5
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1146.3 1276 49.3
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1118.2 891 65.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1104.4 975 59.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1085.9 949 62.5
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.7e-302 1043.1 797 66.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.4e-290 1002.3 666 77.6
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.2e-289 999.6 1194 46.4
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 6.0e-287 991.5 818 63.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 7.6e-266 921.4 1209 44.0
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.8e-219 767.3 1336 37.6
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 8.0e-215 751.9 548 71.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 4.4e-189 666.4 625 57.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 4.6e-186 656.4 1410 34.3
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.9e-180 636.3 602 55.0
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.2e-175 621.7 481 68.2
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 8.1e-175 619.0 1314 32.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.3e-168 597.0 492 64.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.3e-152 543.5 647 49.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-125 455.7 317 73.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.3e-124 452.2 1170 31.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.5e-124 449.9 710 43.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.3e-121 442.2 276 80.1
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 9.4e-99 366.3 232 81.5
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-94 352.8 343 53.9
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 5.2e-89 334.0 248 71.4
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.1e-86 323.2 271 60.1
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.1e-86 323.2 271 60.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.3e-76 292.0 200 73.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.9e-75 288.9 243 61.7
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 8.1e-58 230.3 179 64.8
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.5e-56 223.8 175 66.9
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.3e-51 207.2 161 64.6
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.6e-48 197.2 161 62.7
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 9.0e-41 173.7 104 77.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.1e-34 152.5 1223 22.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.1e-33 150.2 125 63.2
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.4e-31 141.0 99 69.7
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.5e-29 135.2 226 42.0
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.4e-25 123.2 118 59.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.2e-22 112.1 108 58.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.3e-20 106.7 134 41.0
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 3.9e-20 105.1 103 53.4
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 8.7e-20 104.0 115 46.1
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 2.5e-19 102.4 115 45.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.5e-19 102.4 160 40.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.1e-17 97.1 162 37.7
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 2.4e-17 95.9 125 43.2
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.7e-15 89.7 62 71.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.6e-13 83.2 125 36.8
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.5e-11 75.9 119 42.9
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.3e-11 75.1 79 49.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 9.7e-11 73.9 54 72.2
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.4e-09 69.3 267 28.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.7e-07 63.2 91 41.8
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 2.2e-07 62.8 47 68.1
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 2.5e-06 59.3 53 58.5
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 4.2e-06 58.5 47 59.6
Gohir.A13G120100 Gossypium hirsutum HOM05D000181 ORTHO05D016211 7.2e-06 57.8 47 59.6


User provided reference genes

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