Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G013100 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 3.5e-39 164.5 82 100.0
Glyma.04G210500 Glycine max HOM05D000237 ORTHO05D001145 1.2e-15 86.3 91 56.0
Glyma.06G155500 Glycine max HOM05D000237 ORTHO05D001145 3.0e-14 81.6 91 53.8
Psat5g060720 Pisum sativum HOM05D000237 ORTHO05D001145 3.9e-14 81.3 91 53.8
VMungo1309G0883 Vigna mungo HOM05D000237 ORTHO05D001145 3.9e-14 81.3 91 53.8
Phvul.009G155000 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 6.7e-14 80.5 91 53.8
TPR.G28194 Trifolium pratense HOM05D000237 ORTHO05D001145 1.5e-13 79.3 91 52.7
Medtr3g096555 Medicago truncatula HOM05D000237 ORTHO05D001145 3.3e-13 78.2 91 51.6
Lalb_Chr12g0203041 Lupinus albus HOM05D000237 ORTHO05D001145 8.2e-12 73.6 88 48.9
Lj1g0026751 Lotus japonicus HOM05D000237 ORTHO05D001145 1.1e-11 73.2 93 51.6
Prupe.1G489100 Prunus persica HOM05D000237 ORTHO05D001145 2.2e-09 65.5 90 43.3
arahy.Tifrunner.gnm1.ann1.0IT1NR Arachis hypogaea HOM05D000237 ORTHO05D001145 3.8e-09 64.7 98 44.9
arahy.Tifrunner.gnm1.ann1.36KCAZ Arachis hypogaea HOM05D000237 ORTHO05D001145 3.8e-09 64.7 98 44.9
SGA_v2.0_scaffold24G10417 Striga asiatica HOM05D000237 ORTHO05D001145 3.8e-09 64.7 91 40.7
Manes.12G158700 Manihot esculenta HOM05D000237 ORTHO05D001145 8.4e-09 63.5 93 46.2
CiPaw.03G118300 Carya illinoinensis HOM05D000237 ORTHO05D001145 1.1e-08 63.2 90 44.4
Haze_25326 Corylus avellana HOM05D000237 ORTHO05D001145 1.1e-08 63.2 83 45.8
VMungo1309G0232 Vigna mungo HOM05D000237 ORTHO05D001145 1.1e-08 63.2 89 42.7
Actinidia21274 Actinidia chinensis HOM05D000237 ORTHO05D001145 1.4e-08 62.8 90 43.3
arahy.Tifrunner.gnm1.ann1.Q6N5X0 Arachis hypogaea HOM05D000237 ORTHO05D001145 1.4e-08 62.8 91 41.8
CSS0035162 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.4e-08 62.8 90 42.2
Cfa002181 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.4e-08 62.8 83 45.8
Sc09g0002250 Simmondsia chinensis HOM05D000237 ORTHO05D001145 1.4e-08 62.8 87 42.5
Atru.chr4.974 Acer truncatum HOM05D000237 ORTHO05D001145 1.9e-08 62.4 87 42.5
Dinv14697 Davidia involucrata HOM05D000237 ORTHO05D001145 1.9e-08 62.4 88 42.0
ECA246G1840 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.9e-08 62.4 89 42.7
Manes.02G168800 Manihot esculenta HOM05D000237 ORTHO05D001145 1.9e-08 62.4 88 43.2
A02p21200 Brassica napus HOM05D000237 ORTHO05D001145 2.5e-08 62.0 88 44.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.5e-08 62.0 92 44.6
CiPaw.15G031000 Carya illinoinensis HOM05D000237 ORTHO05D001145 2.5e-08 62.0 88 44.3
Lsat_1_v5_gn_1_7980 Lactuca sativa HOM05D000237 ORTHO05D001145 2.5e-08 62.0 88 42.0
Lj1g0025999 Lotus japonicus HOM05D000237 ORTHO05D001145 2.5e-08 62.0 91 42.9
Lalb_Chr08g0238201 Lupinus albus HOM05D000237 ORTHO05D001145 2.5e-08 62.0 93 44.1
MD15G1133500 Malus domestica HOM05D000237 ORTHO05D001145 2.5e-08 62.0 90 41.1
arahy.Tifrunner.gnm1.ann1.657AS3 Arachis hypogaea HOM05D000237 ORTHO05D001145 3.2e-08 61.6 91 40.7
AUR62000511 Chenopodium quinoa HOM05D000237 ORTHO05D001145 3.2e-08 61.6 88 40.9
Migut.C01069 Erythranthe guttata HOM05D000237 ORTHO05D001145 3.2e-08 61.6 92 42.4
HanXRQChr05g0149771 Helianthus annuus HOM05D000237 ORTHO05D001145 3.2e-08 61.6 88 43.2
Hund27726 Selenicereus undatus HOM05D000237 ORTHO05D001145 3.2e-08 61.6 87 41.4
Hund27730 Selenicereus undatus HOM05D000237 ORTHO05D001145 3.2e-08 61.6 87 41.4
Actinidia15210 Actinidia chinensis HOM05D000237 ORTHO05D001145 4.2e-08 61.2 90 42.2
CANSAT01G0479 Cannabis sativa HOM05D000237 ORTHO05D001145 4.2e-08 61.2 84 45.2
Lsat_1_v5_gn_6_110320 Lactuca sativa HOM05D000237 ORTHO05D001145 4.2e-08 61.2 88 42.0
Oeu047176.2 Olea europaea HOM05D000237 ORTHO05D001145 4.2e-08 61.2 88 40.9
Phvul.009G130300 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 4.2e-08 61.2 89 42.7
SalBow6G7268 Salvia bowleyana HOM05D000237 ORTHO05D001145 4.2e-08 61.2 82 46.3
TAR628G1575 Trochodendron aralioides HOM05D000237 ORTHO05D001145 4.2e-08 61.2 89 41.6
vmacro00867 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 4.2e-08 61.2 87 43.7
BcaC03g15726 Brassica carinata HOM05D000237 ORTHO05D001145 5.5e-08 60.8 85 45.9
C02p34420 Brassica napus HOM05D000237 ORTHO05D001145 5.5e-08 60.8 85 45.9
BolC2t09472H Brassica oleracea HOM05D000237 ORTHO05D001145 5.5e-08 60.8 85 45.9
CSS0014669 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 5.5e-08 60.8 88 43.2
ECA247G2302 Erigeron canadensis HOM05D000237 ORTHO05D001145 5.5e-08 60.8 94 43.6
FvH4_2g27940 Fragaria vesca HOM05D000237 ORTHO05D001145 5.5e-08 60.8 101 41.6
FAN20G0226 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.5e-08 60.8 101 41.6
FAN24G2197 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.5e-08 60.8 101 41.6
RcHm_v2.0_Chr6g0296761 Rosa chinensis HOM05D000237 ORTHO05D001145 5.5e-08 60.8 101 40.6
Sed0022076 Sechium edule HOM05D000237 ORTHO05D001145 5.5e-08 60.8 103 39.8
AL2G37470 Arabidopsis lyrata HOM05D000237 ORTHO05D001145 7.1e-08 60.5 88 44.3
AT1G77280 Arabidopsis thaliana HOM05D000237 ORTHO05D001145 7.1e-08 60.5 91 41.8
CANSAT25G2606 Cannabis sativa HOM05D000237 ORTHO05D001145 7.1e-08 60.5 90 40.0
Cpa.g.sc2692.2 Carica papaya HOM05D000237 ORTHO05D001145 7.1e-08 60.5 87 42.5
Glyma.04G245300 Glycine max HOM05D000237 ORTHO05D001145 7.1e-08 60.5 91 40.7
PGR044G1651 Punica granatum HOM05D000237 ORTHO05D001145 7.1e-08 60.5 91 40.7
Rhsim11G0071900 Rhododendron simsii HOM05D000237 ORTHO05D001145 7.1e-08 60.5 87 43.7
TWI34G0093 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 7.1e-08 60.5 92 43.5
MSTRG.1409 Avicennia marina HOM05D000237 ORTHO05D001145 9.3e-08 60.1 90 38.9
AUR62006856 Chenopodium quinoa HOM05D000237 ORTHO05D001145 9.3e-08 60.1 88 40.9
Dinv27267 Davidia involucrata HOM05D000237 ORTHO05D001145 9.3e-08 60.1 88 42.0
Gorai.013G108200 Gossypium raimondii HOM05D000237 ORTHO05D001145 9.3e-08 60.1 91 41.8
Thecc.01G137700 Theobroma cacao HOM05D000237 ORTHO05D001145 9.3e-08 60.1 95 40.0
MSTRG.5057 Avicennia marina HOM05D000237 ORTHO05D001145 1.2e-07 59.7 87 42.5
CiPaw.04G080000 Carya illinoinensis HOM05D000237 ORTHO05D001145 1.2e-07 59.7 84 42.9
Ciclev10000358m.g Citrus clementina HOM05D000237 ORTHO05D001145 1.2e-07 59.7 93 43.0
Ciclev10000480m.g Citrus clementina HOM05D000237 ORTHO05D001145 1.2e-07 59.7 97 40.2
FAN27G2116 Fragaria x ananassa HOM05D000237 ORTHO05D001145 1.2e-07 59.7 101 40.6
Nn1g08949 Nelumbo nucifera HOM05D000237 ORTHO05D001145 1.2e-07 59.7 91 40.7
Thecc.08G133500 Theobroma cacao HOM05D000237 ORTHO05D001145 1.2e-07 59.7 90 41.1
MSTRG.25356 Avicennia marina HOM05D000237 ORTHO05D001145 1.6e-07 59.3 88 39.8
DCAR_003590 Daucus carota HOM05D000237 ORTHO05D001145 1.6e-07 59.3 59 55.9
HanXRQChr02g0045131 Helianthus annuus HOM05D000237 ORTHO05D001145 1.6e-07 59.3 88 43.2
Hma1.2p1_0880F.1_g231820 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 1.6e-07 59.3 88 42.0
MD08G1160400 Malus domestica HOM05D000237 ORTHO05D016966 1.6e-07 59.3 90 40.0
Potri.005G067000 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.6e-07 59.3 90 44.4
SalBow7G0658 Salvia bowleyana HOM05D000237 ORTHO05D001145 1.6e-07 59.3 90 40.0
SalBow7G0660 Salvia bowleyana HOM05D000237 ORTHO05D001145 1.6e-07 59.3 90 40.0
THA.LOC104812080 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 1.6e-07 59.3 91 44.0
TAR381G0839 Trochodendron aralioides HOM05D000237 ORTHO05D001145 1.6e-07 59.3 89 42.7
Ah.06g190990 Amaranthus hybridus HOM05D000237 ORTHO05D001145 2.1e-07 58.9 89 39.3
BcaB05g25030 Brassica carinata HOM05D000237 ORTHO05D001145 2.1e-07 58.9 83 45.8
ClCG08G006040 Citrullus lanatus HOM05D000237 ORTHO05D001145 2.1e-07 58.9 86 43.0
MELO3C008469.2 Cucumis melo HOM05D000237 ORTHO05D001145 2.1e-07 58.9 86 43.0
Nn5g28443 Nelumbo nucifera HOM05D000237 ORTHO05D001145 2.1e-07 58.9 85 42.4
SGA_v2.0_scaffold52G18916 Striga asiatica HOM05D000237 ORTHO05D001145 2.1e-07 58.9 89 39.3
Glyma.06G117900 Glycine max HOM05D000237 ORTHO05D001145 2.7e-07 58.5 89 40.4
TAR625G0414 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.7e-07 58.5 89 39.3
Aa31LG4G7290 Aethionema arabicum HOM05D000237 ORTHO05D001145 3.5e-07 58.2 87 42.5
EL10Ac4g09619 Beta vulgaris HOM05D000237 ORTHO05D001145 3.5e-07 58.2 88 38.6
CAN.G405.12 Capsicum annuum HOM05D000237 ORTHO05D001145 3.5e-07 58.2 92 42.4
Ca_16612_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.5e-07 58.2 89 41.6
Cc10_g13710 Coffea canephora HOM05D000237 ORTHO05D001145 3.5e-07 58.2 92 39.1
DCAR_014365 Daucus carota HOM05D000237 ORTHO05D001145 3.5e-07 58.2 91 40.7
Lalb_Chr17g0343581 Lupinus albus HOM05D000237 ORTHO05D001145 3.5e-07 58.2 89 39.3
Potri.002G077900 Populus trichocarpa HOM05D000237 ORTHO05D001145 3.5e-07 58.2 88 42.0
BcaC08g47622 Brassica carinata HOM05D000237 ORTHO05D001145 4.6e-07 57.8 86 44.2
C06p51440 Brassica napus HOM05D000237 ORTHO05D001145 4.6e-07 57.8 86 44.2
BolC6t40162H Brassica oleracea HOM05D000237 ORTHO05D001145 4.6e-07 57.8 86 44.2
Ca_16977_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 4.6e-07 57.8 80 46.2
COL.COLO4_35819 Corchorus olitorius HOM05D000237 ORTHO05D001145 4.6e-07 57.8 89 42.7
Duzib093G0562 Durio zibethinus HOM05D000237 ORTHO05D001145 4.6e-07 57.8 88 40.9
Hma1.2p1_1121F.1_g259240 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 4.6e-07 57.8 88 40.9
Psat5g084440 Pisum sativum HOM05D000237 ORTHO05D001145 4.6e-07 57.8 91 40.7
Sc04g0006030 Simmondsia chinensis HOM05D000237 ORTHO05D001145 4.6e-07 57.8 89 40.4
TWI79G1001 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 4.6e-07 57.8 87 43.7
CSS0019791 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 6.1e-07 57.4 88 42.0
Duzib041G0258 Durio zibethinus HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
Duzib116G0620 Durio zibethinus HOM05D000237 ORTHO05D001145 6.1e-07 57.4 88 43.2
Eucgr.E01004 Eucalyptus grandis HOM05D000237 ORTHO05D001145 6.1e-07 57.4 87 41.4
FAN15G0936 Fragaria x ananassa HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
FAN15G3712 Fragaria x ananassa HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
Gohir.A02G110800 Gossypium hirsutum HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
Gohir.D03G063200 Gossypium hirsutum HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
Hund17349 Selenicereus undatus HOM05D000237 ORTHO05D001145 6.1e-07 57.4 37 73.0
arahy.Tifrunner.gnm1.ann1.ZA5ZVV Arachis hypogaea HOM05D000237 ORTHO05D001145 7.9e-07 57.0 79 46.8
BraA07t31803Z Brassica rapa HOM05D000237 ORTHO05D001145 7.9e-07 57.0 85 44.7
Dinv01951 Davidia involucrata HOM05D000237 ORTHO05D001145 7.9e-07 57.0 103 41.7
Manes.18G082900 Manihot esculenta HOM05D000237 ORTHO05D001145 7.9e-07 57.0 87 40.2
Medtr3g088640 Medicago truncatula HOM05D000237 ORTHO05D001145 7.9e-07 57.0 89 40.4
Potri.005G182800 Populus trichocarpa HOM05D000237 ORTHO05D001145 7.9e-07 57.0 49 57.1
QL09p032269 Quercus lobata HOM05D000237 ORTHO05D001145 7.9e-07 57.0 88 40.9
QL09p032284 Quercus lobata HOM05D000237 ORTHO05D001145 7.9e-07 57.0 88 40.9
Sp5g32450 Schrenkiella parvula HOM05D000237 ORTHO05D001145 7.9e-07 57.0 91 40.7
PGSC0003DMG400025316 Solanum tuberosum HOM05D000237 ORTHO05D001145 7.9e-07 57.0 87 41.4
A07p42820 Brassica napus HOM05D000237 ORTHO05D001145 1.0e-06 56.6 82 45.1
CSS0041262 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.0e-06 56.6 83 41.0
Lj4A681T42 Lonicera japonica HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
Lj7A351T51 Lonicera japonica HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
Nitab4.5_0000317g0200 Nicotiana tabacum HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
Nitab4.5_0009478g0010 Nicotiana tabacum HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
Solyc04g057930.4 Solanum lycopersicum HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
Sopen04g025790 Solanum pennellii HOM05D000237 ORTHO05D001145 1.0e-06 56.6 37 73.0
THA.LOC104809993 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 1.0e-06 56.6 85 43.5
arahy.Tifrunner.gnm1.ann1.R6U3VB Arachis hypogaea HOM05D000237 ORTHO05D001145 1.3e-06 56.2 79 45.6
ClCG02G000290 Citrullus lanatus HOM05D000237 ORTHO05D001145 1.3e-06 56.2 94 39.4
Glyma.13G034500 Glycine max HOM05D000237 ORTHO05D001145 1.3e-06 56.2 89 37.1
Gohir.D12G084500 Gossypium hirsutum HOM05D000237 ORTHO05D001145 1.3e-06 56.2 88 42.0
Lalb_Chr11g0066201 Lupinus albus HOM05D000237 ORTHO05D001145 1.3e-06 56.2 87 41.4
Peaxi162Scf00066g00314 Petunia axillaris HOM05D000237 ORTHO05D001145 1.3e-06 56.2 37 73.0
Sabra05G0138600 Salix brachista HOM05D000237 ORTHO05D001145 1.3e-06 56.2 58 50.0
Sed0010565 Sechium edule HOM05D000237 ORTHO05D001145 1.3e-06 56.2 41 68.3
THA.LOC104804458 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 1.3e-06 56.2 90 41.1
TAR376G0837 Trochodendron aralioides HOM05D000237 ORTHO05D001145 1.3e-06 56.2 37 70.3
ATR1001G006 Amborella trichopoda HOM05D000237 ORTHO05D001145 1.8e-06 55.8 85 38.8
AUR62007707 Chenopodium quinoa HOM05D000237 ORTHO05D001145 1.8e-06 55.8 37 70.3
AUR62013434 Chenopodium quinoa HOM05D000237 ORTHO05D001145 1.8e-06 55.8 37 70.3
CsaV3_6G034030 Cucumis sativus L. HOM05D000237 ORTHO05D001145 1.8e-06 55.8 41 65.9
Thhalv10018181m.g Eutrema salsugineum HOM05D000237 ORTHO05D001145 1.8e-06 55.8 85 43.5
Phvul.001G067700 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 1.8e-06 55.8 87 39.1
Prupe.4G275600 Prunus persica HOM05D000237 ORTHO05D001145 1.8e-06 55.8 59 50.8
SGA_v2.0_scaffold119G32797 Striga asiatica HOM05D000237 ORTHO05D001145 1.8e-06 55.8 87 42.5
TPR.G6331 Trifolium pratense HOM05D000237 ORTHO05D001145 1.8e-06 55.8 89 40.4
VMungo0647G0265 Vigna mungo HOM05D000237 ORTHO05D001145 1.8e-06 55.8 87 39.1
arahy.Tifrunner.gnm1.ann1.J3NUVE Arachis hypogaea HOM05D000237 ORTHO05D001145 2.3e-06 55.5 37 70.3
Potri.007G102400 Populus trichocarpa HOM05D000237 ORTHO05D001145 2.3e-06 55.5 36 75.0
CARHR070770 Cardamine hirsuta HOM05D000237 ORTHO05D001145 3.0e-06 55.1 85 43.5
PSO170G0738 Papaver somniferum HOM05D000237 ORTHO05D001145 3.0e-06 55.1 37 67.6
PSO528G0205 Papaver somniferum HOM05D000237 ORTHO05D001145 3.0e-06 55.1 37 67.6
Aqoxy6G00306 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 3.9e-06 54.7 84 39.3
Gorai.008G094600 Gossypium raimondii HOM05D000237 ORTHO05D001145 3.9e-06 54.7 88 40.9
Actinidia03426 Actinidia chinensis HOM05D000237 ORTHO05D001145 5.1e-06 54.3 35 74.3
Actinidia33326 Actinidia chinensis HOM05D000237 ORTHO05D026387 5.1e-06 54.3 35 74.3
Actinidia33634 Actinidia chinensis HOM05D000237 ORTHO05D001145 5.1e-06 54.3 35 74.3
Cc02_g29390 Coffea canephora HOM05D000237 ORTHO05D001145 5.1e-06 54.3 85 42.4
CsaV3_2G019550 Cucumis sativus L. HOM05D000237 ORTHO05D001145 5.1e-06 54.3 94 41.5
MD15G1134800 Malus domestica HOM05D000237 ORTHO05D001145 5.1e-06 54.3 37 70.3
PGR119G2061 Punica granatum HOM05D000237 ORTHO05D001145 5.1e-06 54.3 59 49.2
TWI31G1053 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 5.1e-06 54.3 50 56.0
Actinidia20027 Actinidia chinensis HOM05D000237 ORTHO05D001145 6.7e-06 53.9 83 38.6
EL10Ac1g01361 Beta vulgaris HOM05D000237 ORTHO05D001145 6.7e-06 53.9 41 61.0
Carub.0002s2416 Capsella rubella HOM05D000237 ORTHO05D001145 6.7e-06 53.9 83 43.4
Glyma.14G155500 Glycine max HOM05D000237 ORTHO05D001145 6.7e-06 53.9 37 64.9
CDE02G1058 Ceratophyllum demersum HOM05D000237 ORTHO05D001145 8.7e-06 53.5 91 37.4
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 8.7e-06 53.5 37 67.6
Lj1g0008419 Lotus japonicus HOM05D000237 ORTHO05D001145 8.7e-06 53.5 37 67.6
MBI06_g35215_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 8.7e-06 53.5 39 61.5
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 8.7e-06 53.5 83 37.3


User provided reference genes

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