Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 6.5e-61 237.3 125 100.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.5e-49 199.5 123 82.9
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 3.3e-49 198.4 123 84.6
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.2e-41 173.3 125 74.4
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 2.4e-39 165.6 129 71.3
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 9.1e-39 163.7 116 77.6
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 9.1e-39 163.7 125 71.2
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 4.5e-38 161.4 129 69.0
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 7.7e-38 160.6 120 70.8
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.0e-37 160.2 117 72.6
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 2.9e-37 158.7 126 68.3
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 1.5e-36 156.4 126 69.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 2.5e-36 155.6 120 70.0
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.5e-36 155.6 124 71.0
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 3.3e-36 155.2 124 70.2
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.6e-35 152.9 120 67.5
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.1e-35 152.5 124 70.2
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 4.7e-35 151.4 120 70.8
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 8.0e-35 150.6 120 69.2
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.8e-34 149.4 126 69.0
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 2.3e-34 149.1 120 69.2
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 3.0e-34 148.7 120 69.2
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 4.0e-34 148.3 120 69.2
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.2e-33 146.7 120 67.5
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 1.2e-33 146.7 123 64.2
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.2e-33 146.7 126 64.3
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 2.0e-33 146.0 119 66.4
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 5.7e-33 144.4 120 68.3
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 1.7e-32 142.9 125 65.6
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.2e-32 142.5 134 59.0
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 3.7e-32 141.7 120 65.8
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 3.7e-32 141.7 132 59.1
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 8.3e-32 140.6 123 61.0
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 8.3e-32 140.6 119 64.7
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.1e-31 140.2 120 66.7
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 4.1e-31 138.3 127 62.2
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 5.4e-31 137.9 120 61.7
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 5.4e-31 137.9 125 62.4
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 9.2e-31 137.1 120 61.7
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.2e-30 136.7 124 61.3
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.0e-30 136.0 125 62.4
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 2.0e-30 136.0 117 63.2
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.0e-30 136.0 121 62.8
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.7e-30 135.6 126 61.1
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 4.5e-30 134.8 124 58.9
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 4.5e-30 134.8 121 63.6
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.7e-29 132.9 128 59.4
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.6e-29 131.0 125 60.0
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 6.6e-29 131.0 120 60.8
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.5e-28 129.8 125 60.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.9e-28 129.4 117 60.7
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 3.3e-28 128.6 120 63.3
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 3.3e-28 128.6 125 59.2
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 4.3e-28 128.3 120 59.2
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 4.3e-28 128.3 120 62.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.6e-27 126.3 119 58.8
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 2.8e-27 125.6 124 59.7
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 2.8e-27 125.6 121 65.3
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.6e-27 125.2 127 59.8
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 4.7e-27 124.8 125 58.4
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.1e-27 124.4 131 56.5
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.1e-27 124.4 122 59.0
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.0e-27 124.0 119 58.0
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.0e-26 123.6 120 58.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 2.3e-26 122.5 128 58.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.0e-26 122.1 126 58.7
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.0e-26 122.1 124 58.9
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 6.8e-26 120.9 106 61.3
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.2e-25 120.2 125 58.4
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.2e-25 120.2 124 55.6
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 1.5e-25 119.8 106 59.4
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.5e-25 119.8 119 58.0
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 9.8e-25 117.1 124 57.3
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.9e-24 115.5 125 56.8
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.9e-24 114.8 121 58.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 5.4e-23 111.3 122 55.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 9.2e-23 110.5 164 45.1
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.6e-22 109.8 118 56.8
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 2.0e-22 109.4 121 55.4
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.0e-22 109.4 116 56.9
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 3.5e-22 108.6 104 58.7
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.0e-21 107.1 75 74.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 1.0e-21 107.1 75 74.7
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 1.0e-21 107.1 120 56.7
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 1.0e-21 107.1 120 56.7
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.3e-21 106.7 116 56.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 3.0e-21 105.5 125 54.4
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 3.0e-21 105.5 125 54.4
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 3.0e-21 105.5 125 54.4
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.9e-21 105.1 122 52.5
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 5.0e-21 104.8 124 54.0
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 5.0e-21 104.8 123 56.1
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 6.6e-21 104.4 125 52.0
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 6.6e-21 104.4 123 56.1
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 2.1e-19 99.4 120 52.5
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 2.8e-19 99.0 113 54.0
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 6.2e-19 97.8 111 48.6
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.1e-18 97.1 111 55.0
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.1e-18 97.1 68 75.0
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 5.8e-17 91.3 62 72.6
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 2.2e-16 89.4 108 49.1
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.7e-16 88.6 124 49.2
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 4.9e-16 88.2 121 50.4
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.4e-15 85.9 108 55.6
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 2.4e-15 85.9 106 48.1
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 3.2e-15 85.5 114 46.5
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 9.2e-15 84.0 87 62.1
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 4.6e-14 81.6 124 45.2
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 4.6e-14 81.6 124 45.2
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 7.8e-14 80.9 121 47.1
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 4.3e-12 75.1 104 48.1
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.4e-07 60.1 87 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 2.4e-07 59.3 118 36.4
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.1e-07 58.5 39 71.8
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 7.1e-07 57.8 33 81.8
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 9.2e-07 57.4 61 47.5
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.2e-06 57.0 85 40.0
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.6e-06 55.1 51 45.1
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 4.6e-06 55.1 56 46.4
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 6.0e-06 54.7 46 56.5
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 6.0e-06 54.7 51 45.1
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 6.0e-06 54.7 47 46.8
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 6.0e-06 54.7 56 44.6
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 7.8e-06 54.3 27 88.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.8e-06 54.3 46 54.3
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.8e-06 54.3 46 54.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 7.8e-06 54.3 46 54.3
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 7.8e-06 54.3 56 44.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.8e-06 54.3 56 46.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.8e-06 54.3 121 31.4


User provided reference genes

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