Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 0.0e+00 2556.2 1388 100.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 0.0e+00 2241.5 1392 89.6
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 2072.4 1396 81.4
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 2055.4 1394 80.8
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1561.6 1414 64.4
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1559.7 1414 64.4
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 0.0e+00 1540.0 1423 62.7
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 0.0e+00 1530.0 1416 63.6
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 0.0e+00 1521.5 1433 63.6
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 0.0e+00 1305.0 1475 55.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 0.0e+00 1280.0 1420 55.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 0.0e+00 1248.8 1106 64.5
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 4.4e-307 1058.5 1416 49.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.0e-267 926.8 1427 44.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.1e-247 859.0 1413 43.9
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.0e-243 847.0 1534 40.1
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.9e-241 840.5 1435 42.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.4e-233 814.3 1530 39.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.1e-220 771.5 1446 41.8
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 2.4e-220 770.4 1437 40.2
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.1e-220 770.0 1446 41.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 4.2e-209 733.0 1439 42.7
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.2e-208 731.5 1540 38.4
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 3.3e-206 723.4 1536 38.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 1.3e-205 721.5 1437 38.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.1e-199 699.5 1563 37.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 3.0e-191 673.7 1300 39.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 6.7e-191 672.5 1514 36.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 5.9e-187 659.4 1336 38.7
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.1e-184 651.0 1441 36.6
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.8e-183 647.9 1437 36.9
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 5.2e-183 646.4 1315 38.6
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.1e-182 645.2 1441 36.2
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.5e-182 644.8 1441 36.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.3e-182 643.7 1380 38.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.2e-181 641.0 1561 36.5
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 2.8e-181 640.6 1432 36.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-179 634.8 1432 36.0
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 4.5e-179 633.3 1439 37.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.9e-179 632.9 1425 37.3
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 5.0e-178 629.8 1437 36.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 2.5e-177 627.5 1502 38.8
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.0e-175 620.5 1497 35.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.7e-174 616.3 1456 36.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.7e-171 607.4 1437 36.6
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.1e-164 583.9 1437 35.6
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.2e-163 582.0 1461 36.6
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.9e-161 574.7 1260 39.5
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.2e-159 566.6 1392 39.0
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 9.2e-148 529.3 1453 34.0
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 6.8e-135 486.5 1382 33.5
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.2e-134 485.7 1347 32.7
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.8e-128 464.5 1459 33.0
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.2e-124 451.1 1395 32.1
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 7.8e-123 446.4 1359 33.8
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 5.1e-122 443.7 1441 31.2
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.9e-121 441.8 1508 31.4
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.0e-118 431.8 1387 33.5
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 9.9e-118 429.5 1419 31.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 5.4e-116 423.7 1328 32.8
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.7e-115 421.4 1448 32.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.3e-114 419.1 1412 31.0
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.1e-103 381.3 1433 31.4
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.2e-100 371.3 1404 31.0
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 2.1e-99 368.6 575 44.9
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.6e-94 351.7 1388 29.5
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.7e-89 334.0 766 36.6
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.8e-87 328.9 308 58.1
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.4e-82 312.8 1459 28.2
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 6.3e-80 303.9 696 35.5
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.7e-75 288.5 1190 29.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 6.1e-75 287.3 827 36.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 2.3e-74 285.4 967 31.6
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.8e-74 283.5 1060 31.4
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 7.0e-71 273.9 823 34.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.0e-69 267.7 679 33.3
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.8e-66 259.2 672 33.6
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 5.2e-66 257.7 670 34.8
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.7e-64 252.7 746 30.0
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 6.3e-64 250.8 956 29.2
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.7e-61 242.7 708 31.1
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 5.5e-60 237.7 1263 27.4
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 4.0e-58 231.5 666 31.8
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 5.2e-58 231.1 1397 26.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 9.8e-49 200.3 403 36.0
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.9e-45 188.7 1427 25.5
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 5.0e-45 188.0 1106 27.0
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.9e-44 186.0 1103 26.8
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.7e-43 181.4 1149 27.2
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.4e-42 179.9 1196 26.9
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-40 173.3 310 40.0
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.0e-38 166.0 827 27.3
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 4.6e-38 164.9 1170 26.8
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 1.1e-36 160.2 173 54.9
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 4.3e-36 158.3 682 28.6
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 7.3e-36 157.5 169 54.4
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 3.6e-35 155.2 1203 24.9
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 5.2e-34 151.4 1276 25.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 2.9e-32 145.6 479 33.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.0e-29 137.1 895 26.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.3e-29 136.0 499 32.5
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.1e-28 133.7 1363 24.4
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 9.5e-28 130.6 142 58.5
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 4.7e-27 128.3 443 31.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-26 127.1 478 30.8
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 3.1e-26 125.6 443 31.6
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 3.1e-26 125.6 518 30.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-26 125.6 361 35.5
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.0e-25 122.9 1461 24.3
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-25 122.9 541 29.4
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.4e-25 122.1 518 30.1
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.2e-24 119.4 816 27.1
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 6.4e-24 117.9 408 31.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.4e-24 117.9 836 27.6
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 6.4e-24 117.9 329 35.0
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 4.1e-23 115.2 300 36.3
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 5.4e-23 114.8 482 29.7
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 5.4e-23 114.8 482 29.7
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 7.1e-23 114.4 774 27.4
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 7.8e-22 110.9 447 29.3
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.1e-20 107.1 769 26.5
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 8.1e-19 100.9 481 30.6
Psat0ss3759g0400 Pisum sativum HOM05D000846 ORTHO05D001340 1.8e-18 99.8 83 65.1
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-17 97.1 893 27.7
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.9e-17 94.0 422 28.7
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 2.4e-15 89.4 234 35.9
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 3.2e-15 89.0 416 31.0
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.1e-14 86.3 791 26.5
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 7.8e-14 84.3 150 38.7
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.0e-13 84.0 262 37.0
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 6.6e-13 81.3 543 26.9
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 6.6e-13 81.3 456 27.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 8.7e-13 80.9 776 24.9
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 9.6e-12 77.4 369 27.6
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-11 76.6 125 41.6
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 2.1e-11 76.3 303 32.3
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.8e-11 75.9 171 35.1
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.1e-10 73.9 480 28.8
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 70.1 339 30.1
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-09 70.1 191 35.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-09 70.1 220 32.7
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-08 65.9 122 34.4
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.8e-08 65.5 90 43.3
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.1e-07 63.9 84 45.2
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 2.4e-07 62.8 228 26.8
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-06 60.5 147 35.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.6e-06 60.1 84 42.9
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 4.6e-06 58.5 612 25.8


User provided reference genes

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