Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.2e-146 522.3 267 100.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 4.2e-142 508.1 267 96.6
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.2e-134 481.9 267 92.1
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 9.8e-131 470.3 267 90.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.0e-128 462.6 264 89.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 3.5e-128 461.8 267 88.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.0e-127 458.0 268 88.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 8.5e-127 457.2 267 87.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-123 446.8 267 86.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.7e-122 443.0 268 84.3
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.2e-122 442.6 274 83.9
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 3.7e-122 441.8 267 83.1
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.7e-122 441.8 267 85.0
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 3.5e-120 435.3 268 83.2
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 3.5e-120 435.3 270 84.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.7e-119 433.0 268 82.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-119 432.6 267 84.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.0e-119 431.4 268 84.3
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 5.0e-119 431.4 268 83.2
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.1e-118 430.3 268 83.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 3.3e-118 428.7 268 83.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 7.2e-118 427.6 268 81.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 9.5e-118 427.2 268 82.8
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.1e-117 426.0 268 82.1
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 3.6e-117 425.2 268 82.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 8.0e-117 424.1 268 81.0
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.0e-116 423.7 268 82.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.3e-116 422.5 263 83.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.3e-116 422.5 268 81.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.3e-116 422.5 268 82.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.3e-116 422.5 268 81.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.0e-116 422.2 268 82.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 6.8e-116 421.0 268 80.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.2e-115 420.2 268 81.3
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.2e-115 420.2 268 81.7
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.0e-115 419.5 268 81.0
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.6e-115 419.1 268 81.7
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 3.4e-115 418.7 260 82.7
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.7e-115 417.9 269 81.8
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.2e-114 416.0 265 80.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.7e-114 415.2 265 80.8
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.9e-114 414.8 268 81.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.1e-113 413.7 266 81.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.4e-113 413.3 270 81.9
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.2e-113 412.1 265 80.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 5.4e-113 411.4 263 80.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 9.2e-113 410.6 263 80.2
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-112 410.2 268 79.1
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.2e-112 410.2 265 80.4
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.0e-112 409.5 268 78.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.0e-111 407.1 268 81.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-111 406.0 320 70.3
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.3e-111 406.0 267 78.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.9e-111 405.6 268 79.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.9e-111 405.6 268 79.5
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.9e-111 405.6 276 79.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.9e-111 405.2 267 78.7
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 3.9e-111 405.2 251 84.5
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.6e-111 404.4 256 84.0
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.6e-111 404.4 268 79.1
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.1e-110 403.7 260 79.6
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-110 403.7 268 78.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.3e-110 401.0 268 78.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 7.3e-110 401.0 268 77.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 9.5e-110 400.6 275 78.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 9.5e-110 400.6 267 78.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.2e-109 400.2 269 80.3
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-109 400.2 270 75.9
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.6e-109 399.8 269 78.8
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.6e-109 399.8 268 77.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 6.2e-109 397.9 265 78.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.1e-108 395.6 268 78.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.8e-108 394.4 268 77.2
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.8e-108 394.4 263 78.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.2e-107 393.7 268 76.5
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.2e-107 393.7 265 77.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.5e-107 393.3 261 78.2
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.0e-107 392.9 268 76.1
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.7e-106 389.8 265 76.2
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.7e-106 389.8 238 81.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.7e-106 389.8 265 75.8
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.2e-106 389.4 292 73.3
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.2e-106 389.4 262 79.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.7e-106 388.7 269 78.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 4.9e-106 388.3 266 76.3
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-105 387.1 269 75.1
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.4e-105 386.0 268 75.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.2e-105 385.6 251 79.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 7.0e-105 384.4 251 78.9
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 9.2e-105 384.0 269 74.0
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-104 383.3 295 70.8
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.6e-104 383.3 308 68.8
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.6e-104 383.3 268 74.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.5e-104 382.1 252 78.2
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.6e-104 381.7 256 78.5
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.0e-104 381.3 265 76.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.5e-102 376.7 262 75.6
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.6e-102 374.8 255 76.1
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.2e-101 371.3 264 75.4
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.4e-100 370.2 260 75.0
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.8e-100 369.8 281 70.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.2e-99 367.1 251 77.3
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.6e-99 365.9 271 72.3
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.4e-99 365.5 269 71.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 7.5e-99 364.4 285 71.9
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.5e-99 364.4 266 71.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 4.9e-98 361.7 269 71.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 4.1e-97 358.6 261 73.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 5.4e-97 358.2 252 75.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 7.1e-97 357.8 265 72.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.2e-97 357.5 258 71.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.2e-97 357.5 258 71.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.7e-95 353.2 267 71.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.5e-94 350.1 257 70.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.8e-93 345.9 257 72.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.2e-92 341.7 262 68.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.8e-92 341.3 263 69.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.8e-92 341.3 263 68.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 6.8e-92 341.3 257 69.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 8.9e-92 340.9 263 68.8
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-91 340.5 269 69.5
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.5e-91 340.1 263 67.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.6e-91 339.3 263 70.0
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.6e-91 339.3 263 69.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.6e-91 339.3 263 69.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 3.4e-91 339.0 263 69.2
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.9e-91 337.4 263 68.8
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.7e-90 336.7 263 68.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.2e-90 336.3 228 78.1
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.9e-90 335.9 261 68.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.1e-89 334.0 263 68.1
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.4e-89 332.8 254 69.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.2e-88 330.5 281 64.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.2e-88 330.5 263 68.4
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.6e-88 330.1 260 70.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.8e-88 327.8 262 68.3
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-86 323.9 263 67.7
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 7.3e-86 321.2 236 72.5
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 6.8e-84 314.7 205 82.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.4e-82 308.1 261 64.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.9e-81 306.6 265 61.5
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 9.3e-81 304.3 263 62.4
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-80 303.9 197 81.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.6e-80 303.5 267 62.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.3e-78 295.4 267 61.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 9.6e-78 294.3 242 68.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.8e-77 292.0 197 78.2
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 6.9e-76 288.1 264 60.6
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.6e-75 286.2 263 59.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.0e-71 272.7 198 73.7
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-67 260.8 144 89.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-58 230.7 175 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.1e-40 168.7 216 48.6
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.5e-38 163.3 179 52.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.8e-37 159.1 243 44.0
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 4.1e-36 156.0 262 38.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.0e-34 151.4 122 68.9
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.9e-31 139.4 118 66.9
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-30 135.6 74 91.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.7e-30 134.8 93 71.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.2e-25 119.8 76 76.3
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-24 117.9 197 42.1
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.6e-19 100.9 154 41.6
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 3.2e-17 93.2 118 41.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-15 87.4 100 49.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.6e-11 74.3 122 45.1
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.8e-10 69.7 47 76.6
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.5e-10 68.6 41 78.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.1e-08 63.9 41 73.2
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.3e-07 60.5 43 65.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 3.0e-07 60.1 156 32.7
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.5e-06 57.8 86 32.6
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-06 57.8 30 93.3


User provided reference genes

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