Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 4.8e-163 577.8 296 100.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.4e-141 506.5 295 89.8
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 2.5e-119 432.6 298 77.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.3e-117 426.0 295 74.2
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 5.2e-109 398.3 264 80.7
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 3.4e-108 395.6 295 72.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 4.4e-108 395.2 300 69.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.7e-105 386.0 296 72.3
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 3.9e-104 382.1 247 77.3
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 5.1e-104 381.7 295 67.1
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 8.6e-104 380.9 245 78.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.9e-103 379.8 248 74.2
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 5.6e-103 378.3 295 66.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 9.5e-103 377.5 253 73.9
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.6e-102 375.6 243 77.4
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 8.1e-102 374.4 253 73.5
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.8e-101 373.2 252 75.0
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.3e-101 372.9 245 77.1
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.2e-100 370.5 248 72.6
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.6e-100 369.4 294 62.6
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.6e-100 369.4 302 63.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 5.8e-100 368.2 254 72.4
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.8e-100 368.2 302 63.9
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 9.9e-100 367.5 242 74.0
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 9.9e-100 367.5 244 74.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.3e-99 367.1 245 73.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.7e-99 366.7 254 72.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.7e-99 366.7 256 73.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.2e-99 366.3 295 66.8
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 8.4e-99 364.4 294 61.9
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 3.2e-98 362.5 245 71.0
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 4.1e-98 362.1 264 72.0
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.6e-97 360.1 245 72.7
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.1e-97 359.8 300 62.0
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 6.0e-97 358.2 245 72.2
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 6.0e-97 358.2 290 62.4
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 7.8e-97 357.8 248 69.8
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.3e-96 357.1 287 62.0
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.3e-96 356.3 291 64.9
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.9e-96 355.5 247 70.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 3.9e-96 355.5 289 64.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.9e-96 355.5 253 71.5
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.9e-96 355.5 265 71.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 8.6e-96 354.4 252 71.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.9e-95 353.2 244 71.7
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.9e-95 353.2 245 71.4
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 2.5e-95 352.8 291 60.1
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 4.3e-95 352.1 276 65.9
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 5.6e-95 351.7 250 70.8
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 5.6e-95 351.7 291 59.8
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 7.3e-95 351.3 282 62.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 7.3e-95 351.3 262 66.4
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 9.6e-95 350.9 248 71.4
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.2e-94 350.5 290 63.8
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.2e-94 350.5 248 71.0
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.8e-94 349.4 261 67.8
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.8e-94 349.4 298 63.8
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 3.6e-94 349.0 289 63.0
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 3.6e-94 349.0 245 69.4
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.4e-93 347.1 261 67.4
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.4e-93 347.1 268 65.7
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.8e-93 346.7 261 67.0
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.8e-93 346.7 282 62.1
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.1e-93 345.9 295 61.7
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 4.0e-93 345.5 281 63.7
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.0e-93 345.5 282 64.5
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.0e-93 345.5 278 64.4
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.0e-93 345.5 245 70.2
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 6.9e-93 344.7 247 70.4
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 8.9e-93 344.4 282 63.8
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.2e-92 344.0 295 61.7
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-92 344.0 241 70.5
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.0e-92 343.2 256 65.6
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.6e-92 342.8 248 68.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.8e-92 341.7 299 61.5
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 5.8e-92 341.7 250 68.4
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.3e-91 340.5 264 65.9
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.8e-91 339.0 242 70.7
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 4.9e-91 338.6 244 68.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 6.4e-91 338.2 253 65.6
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-90 337.4 253 68.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-90 337.4 249 68.3
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.4e-90 337.0 231 72.3
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.9e-90 336.7 290 62.4
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.9e-90 336.7 227 72.2
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 3.2e-90 335.9 244 68.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 7.1e-90 334.7 243 66.7
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.6e-89 332.0 220 73.2
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 3.0e-88 329.3 255 63.5
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.1e-87 327.4 244 64.3
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.3e-86 323.9 241 65.6
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.2e-86 321.6 303 59.1
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.1e-85 319.3 253 66.0
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 6.4e-83 311.6 232 65.1
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 7.1e-82 308.1 249 61.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.2e-81 307.4 246 63.0
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 2.3e-80 303.1 243 60.5
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 6.7e-80 301.6 227 69.2
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.5e-76 290.4 249 58.2
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.8e-76 288.5 246 59.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 7.6e-76 288.1 207 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 4.2e-74 282.3 275 52.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 6.0e-73 278.5 209 65.1
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.1e-70 268.1 194 70.1
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.3e-69 265.4 244 54.9
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.0e-68 263.5 207 65.2
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 3.9e-64 249.2 266 51.1
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.8e-59 232.6 140 77.1
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.6e-49 199.1 148 66.9
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.4e-45 187.6 226 46.5
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.2e-44 184.5 214 46.3
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.6e-36 156.8 215 40.0
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.6e-33 146.4 87 81.6
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 6.1e-33 145.6 162 48.8
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.4e-32 144.4 137 56.9
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.5e-20 102.8 82 58.5
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.3e-19 101.3 110 50.9
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 3.8e-19 99.8 68 63.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.0e-19 99.4 61 75.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.6e-17 93.2 56 75.0
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 3.6e-17 93.2 137 41.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 6.8e-16 89.0 58 72.4
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.5e-15 87.8 63 60.3
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 3.7e-14 83.2 48 83.3
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.6e-12 77.8 62 59.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.7e-12 77.0 51 68.6
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 5.9e-12 75.9 90 52.2
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 2.3e-11 73.9 49 69.4
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 2.3e-11 73.9 171 35.1
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 6.6e-11 72.4 103 40.8
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 8.6e-11 72.0 53 64.2
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 1.6e-09 67.8 43 69.8
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 2.1e-09 67.4 82 46.3


User provided reference genes

Program Settings