Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 2194.1 1091 100.0
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 2078.9 1089 94.3
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 2050.8 1091 92.9
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 2050.8 1091 92.6
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1974.9 1091 89.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1972.2 1091 89.0
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1951.4 1093 88.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1934.5 1087 87.9
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1924.8 1091 86.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1889.4 1090 85.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1844.7 1084 83.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1844.7 1084 83.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1742.6 1085 78.2
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1732.6 1085 77.1
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1731.1 1084 77.1
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1724.1 1086 77.6
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1723.0 1084 77.3
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1722.2 1087 76.6
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1086 77.4
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1712.2 1085 77.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1703.3 1084 76.6
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1703.0 1084 75.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 1088 77.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1089 75.3
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1699.1 1088 75.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1693.7 1085 76.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1088 75.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1088 75.6
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1085 76.2
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1073 76.0
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1676.8 1086 75.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1675.2 1084 75.9
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1090 75.9
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1084 75.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1084 75.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1669.1 1167 71.0
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1084 75.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1084 74.8
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1084 75.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1087 74.5
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1087 74.4
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1661.0 1167 70.8
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1085 75.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1084 75.3
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1086 73.8
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1085 74.7
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1086 74.3
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1649.4 1085 74.8
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1086 73.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1090 74.5
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1635.9 1113 71.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1090 72.7
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1096 71.7
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1086 73.8
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1085 72.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1089 71.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1083 71.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1084 71.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1111 70.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1097 71.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1087 71.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1580.8 1085 71.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1087 70.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1084 70.6
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1085 70.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1084 71.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1572.0 1088 71.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1090 71.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1084 71.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1085 72.2
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1019 75.1
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1093 70.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1088 70.6
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1091 69.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1084 70.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1084 70.6
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1095 70.3
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1097 68.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1087 70.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1065 71.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1084 70.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1088 70.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1088 70.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 1088 70.3
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 1088 70.6
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1086 69.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1088 70.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1088 70.2
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1553.9 1083 70.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1088 70.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1084 69.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1085 69.1
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1116 68.0
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1091 69.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1537.7 998 75.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1083 70.1
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1526.1 1087 68.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1526.1 1105 69.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1082 68.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1001 73.9
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1515.4 1082 67.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 1105 67.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1153 64.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1058 69.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1112 65.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 1086 64.9
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 981 71.5
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1445.3 1010 72.2
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1431.8 1084 66.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1408.3 1108 62.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1345.5 1087 64.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1292.3 790 80.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1178.7 1090 54.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1165.6 1087 54.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1158.7 691 81.3
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1129 52.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1140.6 1090 52.7
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1139.0 717 77.5
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1095 51.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 673 80.2
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1085.1 759 70.9
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.7e-290 1003.0 844 59.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.1e-278 963.8 817 60.6
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.6e-272 943.3 613 76.3
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.4e-252 877.1 962 48.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.2e-244 847.8 630 68.1
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.3e-233 812.8 499 77.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.4e-231 807.4 635 63.6
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.5e-217 760.8 974 45.7
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 5.7e-177 625.9 616 53.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-166 591.7 430 68.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.4e-151 540.8 303 83.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-131 475.3 312 73.1
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 8.3e-128 462.6 389 61.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.6e-81 308.1 298 55.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.3e-76 290.8 241 60.6
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.6e-70 272.3 136 91.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.9e-65 253.8 205 62.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.6e-49 201.8 138 65.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.8e-36 156.8 214 47.2
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.4e-34 152.1 139 59.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 4.7e-30 137.9 72 86.1
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 8.0e-30 137.1 156 46.8
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.8e-29 136.0 106 63.2
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.8e-27 128.6 123 56.9
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.6e-25 122.9 97 62.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.6e-22 112.8 88 62.5
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 3.6e-14 85.1 48 87.5
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.0e-13 81.6 49 71.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 9.8e-12 77.0 73 45.2
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 4.1e-10 71.6 162 36.4
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.1e-06 59.3 39 66.7


User provided reference genes

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