Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.5e-39 166.0 102 100.0
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 9.8e-31 136.7 102 72.5
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.1e-25 119.0 102 76.5
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.2e-23 113.2 104 77.9
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 5.4e-21 104.4 104 56.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.0e-21 104.0 104 54.8
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 3.5e-20 101.7 100 73.0
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 4.5e-20 101.3 104 53.8
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 4.5e-20 101.3 100 73.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 5.9e-20 100.9 105 57.1
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.0e-19 100.1 104 53.8
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.0e-19 100.1 104 53.8
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.0e-19 97.8 98 56.1
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-18 96.3 105 55.2
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 9.5e-18 93.6 104 56.7
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 9.5e-18 93.6 104 51.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 2.1e-17 92.4 104 52.9
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 4.7e-17 91.3 97 53.6
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 6.1e-17 90.9 97 52.6
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.0e-16 90.1 90 54.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.4e-16 89.7 106 50.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.8e-16 89.4 84 56.0
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-16 88.6 91 56.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.0e-16 88.6 106 51.9
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 4.0e-16 88.2 103 49.5
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.0e-16 88.2 104 67.3
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.0e-16 88.2 85 57.6
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 6.8e-16 87.4 90 53.3
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 6.8e-16 87.4 90 53.3
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 6.8e-16 87.4 91 52.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 8.9e-16 87.0 91 53.8
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.2e-15 86.7 97 50.5
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.2e-15 86.7 91 52.7
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.5e-15 86.3 91 53.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.5e-15 86.3 104 51.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.5e-15 86.3 106 51.9
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.5e-15 86.3 95 50.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.0e-15 85.9 104 51.9
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.0e-15 85.9 105 51.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.0e-15 85.9 99 54.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 2.0e-15 85.9 106 61.3
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.0e-15 85.9 105 47.6
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.0e-15 85.9 105 47.6
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.6e-15 85.5 91 52.7
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.4e-15 85.1 104 51.9
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.4e-15 85.1 85 55.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.4e-15 85.1 100 53.0
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.4e-15 84.7 103 48.5
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.4e-15 84.7 81 59.3
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.4e-15 84.7 99 54.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.8e-15 84.3 85 57.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 7.5e-15 84.0 91 51.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 9.8e-15 83.6 96 53.1
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.3e-14 83.2 97 51.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.3e-14 83.2 85 55.3
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.7e-14 82.8 91 50.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.7e-14 82.8 94 52.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.2e-14 82.4 97 51.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.2e-14 82.4 91 51.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.2e-14 82.4 106 50.9
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.2e-14 82.4 94 51.1
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 2.9e-14 82.0 98 52.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.9e-14 82.0 102 47.1
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 6.4e-14 80.9 106 53.8
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 6.4e-14 80.9 104 51.9
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.4e-14 80.9 99 50.5
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.3e-14 80.5 99 48.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 8.3e-14 80.5 93 50.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 8.3e-14 80.5 106 46.2
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.1e-13 80.1 80 55.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.1e-13 80.1 90 50.0
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-13 80.1 102 50.0
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.4e-13 79.7 103 46.6
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.4e-13 79.7 94 51.1
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.8e-13 79.3 90 46.7
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.4e-13 79.0 101 46.5
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.4e-13 79.0 79 57.0
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.4e-13 79.0 101 47.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.2e-13 78.6 108 44.4
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.2e-13 78.6 102 47.1
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 5.4e-13 77.8 100 48.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.4e-13 77.8 102 47.1
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.4e-13 77.8 114 45.6
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 5.4e-13 77.8 100 47.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 7.0e-13 77.4 108 44.4
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 7.0e-13 77.4 106 46.2
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 7.0e-13 77.4 110 46.4
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 9.2e-13 77.0 100 51.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.2e-13 77.0 72 58.3
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 9.2e-13 77.0 92 47.8
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.2e-12 76.6 92 48.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.2e-12 76.6 102 46.1
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.6e-12 76.3 103 58.3
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 2.7e-12 75.5 100 46.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.5e-12 75.1 97 51.5
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 4.6e-12 74.7 103 45.6
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 4.6e-12 74.7 92 45.7
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.0e-12 74.3 100 46.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 6.0e-12 74.3 106 46.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.0e-11 73.6 100 43.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.3e-11 73.2 79 54.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.3e-11 73.2 72 65.3
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.7e-11 72.8 83 50.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 2.3e-11 72.4 107 50.5
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.0e-11 72.0 72 76.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.0e-11 72.0 91 52.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 3.0e-11 72.0 101 57.4
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 3.9e-11 71.6 93 47.3
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 3.9e-11 71.6 89 46.1
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 5.0e-11 71.2 105 45.7
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 5.0e-11 71.2 91 45.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.6e-11 70.9 96 52.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 8.6e-11 70.5 100 44.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.1e-10 70.1 104 41.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-10 69.7 89 47.2
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-10 69.7 93 58.1
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.9e-10 69.3 94 47.9
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.5e-10 68.9 82 50.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.5e-10 68.9 96 43.8
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 3.3e-10 68.6 78 47.4
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.6e-10 67.8 93 48.4
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 7.3e-10 67.4 78 64.1
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.2e-09 66.6 80 48.8
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.1e-09 65.9 92 43.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.1e-09 65.9 92 43.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.6e-09 65.1 57 61.4
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 3.6e-09 65.1 106 54.7
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.7e-09 64.7 77 42.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.0e-09 63.9 90 47.8
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.1e-08 63.5 34 94.1
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 1.1e-08 63.5 90 45.6
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.4e-08 63.2 75 52.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-08 63.2 98 44.9
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-08 63.2 75 46.7
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.8e-08 62.8 97 40.2
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.8e-08 62.8 98 43.9
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.3e-08 62.4 106 50.9
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 4.0e-08 61.6 89 41.6
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 4.0e-08 61.6 75 46.7
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 5.2e-08 61.2 89 44.9
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 6.8e-08 60.8 100 40.0
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 8.9e-08 60.5 56 53.6
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.9e-08 60.5 99 41.4
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.2e-07 60.1 71 46.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.6e-07 58.9 65 43.1
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.4e-07 58.2 104 45.2
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.4e-07 58.2 104 45.2
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.8e-07 57.8 100 46.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.7e-06 56.2 69 44.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.2e-06 55.8 52 51.9
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.7e-06 55.1 84 40.5
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 8.3e-06 53.9 104 52.9


User provided reference genes

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