Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 7.1e-105 384.0 205 100.0
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 1.1e-73 280.4 212 77.4
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 5.5e-65 251.5 213 70.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.4e-57 226.9 224 63.4
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 2.5e-57 226.1 228 61.0
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 1.8e-52 209.9 249 55.8
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 2.4e-52 209.5 257 52.9
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.4e-51 205.7 265 52.8
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.3e-45 187.2 253 51.8
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.7e-45 186.8 219 52.1
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 1.7e-45 186.8 219 52.1
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 4.8e-45 185.3 223 52.0
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.4e-44 183.7 219 51.6
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 5.9e-43 178.3 220 50.0
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 2.9e-42 176.0 231 50.6
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 1.4e-41 173.7 235 49.4
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.4e-41 173.7 235 49.4
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 4.2e-41 172.2 239 49.8
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.5e-41 171.8 220 50.0
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.6e-40 170.2 223 51.6
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.7e-40 169.5 218 50.5
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 4.7e-40 168.7 226 50.4
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 7.9e-40 167.9 222 48.2
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.0e-39 167.5 248 48.0
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 3.0e-39 166.0 205 53.7
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 5.2e-39 165.2 217 51.6
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.1e-38 164.1 213 47.4
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.1e-38 164.1 218 50.0
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.5e-38 163.7 223 48.0
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.0e-38 163.3 223 51.6
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 2.6e-38 162.9 223 50.2
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 4.4e-38 162.2 219 50.2
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 5.7e-38 161.8 246 45.5
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 2.2e-37 159.8 233 47.2
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 6.3e-37 158.3 204 47.5
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.0e-35 153.3 220 47.3
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 4.5e-35 152.1 201 49.8
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 4.5e-35 152.1 239 46.4
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 1.3e-34 150.6 197 53.3
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.8e-34 149.1 244 45.9
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 6.5e-34 148.3 237 45.6
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 6.5e-34 148.3 227 46.3
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 8.5e-34 147.9 240 45.4
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 1.5e-33 147.1 234 45.3
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 2.5e-33 146.4 179 53.6
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 9.4e-33 144.4 239 42.7
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.4e-31 140.6 201 48.3
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 1.8e-31 140.2 191 48.7
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.3e-31 139.8 210 45.2
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 4.0e-31 139.0 179 52.5
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 5.2e-31 138.7 210 45.7
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 5.2e-31 138.7 214 46.3
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.5e-30 137.1 229 44.1
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 4.4e-30 135.6 213 45.5
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.3e-29 134.0 265 40.0
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.7e-29 133.7 223 40.8
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 3.7e-29 132.5 217 42.9
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.1e-28 131.0 249 39.8
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.4e-28 129.8 260 41.2
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 4.1e-28 129.0 262 40.1
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 9.1e-28 127.9 213 42.3
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.0e-27 126.7 255 41.2
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 2.2e-26 123.2 237 39.7
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 2.5e-25 119.8 205 41.5
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 2.5e-25 119.8 208 43.3
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 4.2e-25 119.0 215 41.4
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.2e-24 117.5 221 40.7
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 1.6e-24 117.1 147 49.7
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 6.1e-24 115.2 204 42.6
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 2.0e-22 110.2 221 38.5
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.6e-22 109.8 223 42.2
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 1.3e-21 107.5 164 47.6
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 3.7e-21 105.9 196 41.8
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.4e-20 103.2 216 35.2
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 1.2e-19 100.9 218 38.5
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 3.5e-19 99.4 224 38.4
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 3.5e-19 99.4 177 39.0
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 8.6e-18 94.7 204 38.2
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 1.1e-17 94.4 276 32.2
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 2.5e-17 93.2 144 47.9
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 2.5e-17 93.2 144 47.9
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 4.2e-17 92.4 278 31.7
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 1.2e-16 90.9 251 34.3
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.2e-16 90.9 278 32.4
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 2.8e-16 89.7 192 36.5
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 1.4e-15 87.4 135 44.4
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 2.3e-15 86.7 216 34.3
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 4.0e-15 85.9 180 40.0
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 4.0e-15 85.9 99 53.5
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 6.8e-15 85.1 255 31.4
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 8.3e-13 78.2 186 35.5
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.1e-12 77.8 93 54.8
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.1e-12 77.8 130 47.7
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 1.8e-12 77.0 218 33.0
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 2.4e-12 76.6 121 44.6
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 2.4e-12 76.6 121 44.6
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 2.4e-12 76.6 216 32.4
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 7.0e-12 75.1 218 31.7
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 1.2e-11 74.3 185 35.7
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 2.0e-11 73.6 212 29.2
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 1.7e-10 70.5 205 32.2
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 2.3e-10 70.1 107 48.6
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 1.5e-09 67.4 206 29.6
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 2.5e-09 66.6 201 28.9
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 9.5e-09 64.7 90 50.0
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 2.8e-08 63.2 200 29.5
Zm00001eb112640 Zea mays HOM05D007616 ORTHO05D008751 4.7e-08 62.4 138 33.3
Solyc03g033550.3 Solanum lycopersicum HOM05D002661 ORTHO05D002786 6.1e-08 62.0 210 27.1
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 6.1e-08 62.0 193 30.1
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 1.0e-07 61.2 35 80.0
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 1.0e-07 61.2 210 26.7
Nn5g30157 Nelumbo nucifera HOM05D002661 ORTHO05D002786 1.4e-07 60.8 206 27.2
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 1.8e-07 60.5 205 27.8
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 1.8e-07 60.5 210 28.1
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 3.0e-07 59.7 197 26.9
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 3.0e-07 59.7 202 28.7
Psat2g154760 Pisum sativum HOM05D002661 ORTHO05D002786 3.0e-07 59.7 212 27.8
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 3.0e-07 59.7 195 29.2
CARHR053990 Cardamine hirsuta HOM05D012662 ORTHO05D008751 4.0e-07 59.3 246 28.0
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 5.2e-07 58.9 95 43.2
COL.COLO4_21913 Corchorus olitorius HOM05D002661 ORTHO05D002786 5.2e-07 58.9 210 31.0
Dinv39512 Davidia involucrata HOM05D002661 ORTHO05D002786 5.2e-07 58.9 183 29.5
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 6.8e-07 58.5 93 44.1
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 1.2e-06 57.8 202 27.7
CSS0015710 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 1.2e-06 57.8 202 27.2
Hma1.2p1_0956F.1_g241350 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 1.2e-06 57.8 109 35.8
Hma1.2p1_2239F.1_g317813 Hydrangea macrophylla HOM05D002661 ORTHO05D002786 1.2e-06 57.8 109 35.8
MD15G1013000 Malus domestica HOM05D002661 ORTHO05D002786 1.2e-06 57.8 209 28.2
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 1.2e-06 57.8 204 29.9
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 1.5e-06 57.4 194 28.4
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 1.5e-06 57.4 204 27.9
Oeu046268.1 Olea europaea HOM05D000745 ORTHO05D000641 1.5e-06 57.4 196 26.5
CAN.G1735.2 Capsicum annuum HOM05D002661 ORTHO05D002786 2.0e-06 57.0 215 26.5
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 2.0e-06 57.0 198 29.3
Peaxi162Scf00034g02717 Petunia axillaris HOM05D002661 ORTHO05D002786 2.0e-06 57.0 195 30.3
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 2.0e-06 57.0 206 29.1
BcaB05g22043 Brassica carinata HOM05D007616 ORTHO05D008751 2.6e-06 56.6 82 50.0
Cpa.g.sc6.246 Carica papaya HOM05D002661 ORTHO05D002786 2.6e-06 56.6 210 25.7
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 2.6e-06 56.6 208 26.4
Phvul.009G016600 Phaseolus vulgaris HOM05D002661 ORTHO05D002786 2.6e-06 56.6 202 28.7
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.6e-06 56.6 205 28.3
Zm00001eb408480 Zea mays HOM05D052999 ORTHO05D049891 2.6e-06 56.6 134 32.8
CANSAT01G1513 Cannabis sativa HOM05D002661 ORTHO05D002786 3.4e-06 56.2 202 27.7
Gohir.D05G258600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 3.4e-06 56.2 210 28.1
Peaxi162Scf00438g00717 Petunia axillaris HOM05D002661 ORTHO05D002786 3.4e-06 56.2 201 29.9
CiPaw.08G131700 Carya illinoinensis HOM05D002661 ORTHO05D002786 4.4e-06 55.8 206 26.7
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 4.4e-06 55.8 32 81.2
Oeu005316.1 Olea europaea HOM05D002661 ORTHO05D002786 4.4e-06 55.8 197 28.4
Thecc.01G019200 Theobroma cacao HOM05D002661 ORTHO05D002786 4.4e-06 55.8 200 28.0
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 5.7e-06 55.5 82 43.9
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 5.7e-06 55.5 82 43.9
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 5.7e-06 55.5 82 43.9
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 5.7e-06 55.5 203 28.1
Lj2g0022128 Lotus japonicus HOM05D002661 ORTHO05D002786 5.7e-06 55.5 207 28.0
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 7.5e-06 55.1 199 28.6
Gohir.A11G175640 Gossypium hirsutum HOM05D002661 ORTHO05D002786 7.5e-06 55.1 201 28.9
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 7.5e-06 55.1 208 27.4
Sed0015402 Sechium edule HOM05D002661 ORTHO05D002786 7.5e-06 55.1 133 31.6
DCAR_013866 Daucus carota HOM05D002661 ORTHO05D002786 9.8e-06 54.7 206 25.7
HanXRQChr14g0430361 Helianthus annuus HOM05D002661 ORTHO05D002786 9.8e-06 54.7 193 27.5


User provided reference genes

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