Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 9.1e-70 266.9 148 100.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.3e-65 252.3 148 92.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 3.0e-65 251.9 148 93.9
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.5e-61 238.0 148 87.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.6e-58 229.6 148 83.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 4.7e-58 228.0 148 83.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.4e-57 226.5 148 83.1
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.3e-57 225.7 148 82.4
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.6e-56 222.2 148 81.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 9.7e-56 220.3 148 79.7
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-55 219.2 148 80.4
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 79.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 79.7
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 2.4e-54 215.7 148 77.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 5.3e-54 214.5 148 76.4
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 9.1e-54 213.8 148 77.0
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 76.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 75.7
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 76.4
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.9e-52 208.8 147 75.5
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.5e-52 207.6 144 77.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.5e-51 206.5 144 76.4
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 73.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.2e-51 204.9 143 76.9
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 72.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 71.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 73.0
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.4e-49 199.9 143 75.5
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.4e-49 199.9 148 72.3
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 4.0e-49 198.4 148 72.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 6.8e-49 197.6 148 70.3
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.8e-49 197.6 148 73.0
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 8.8e-49 197.2 143 72.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.5e-48 196.4 143 77.6
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 9.8e-48 193.7 150 74.0
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.2e-47 192.6 148 70.9
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.8e-47 192.2 148 73.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.8e-47 191.4 148 73.6
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 4.1e-46 188.3 150 72.0
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.1e-46 188.3 145 69.7
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 7.0e-46 187.6 148 70.3
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 9.1e-46 187.2 148 70.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.2e-45 186.8 152 67.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.2e-45 186.8 120 85.8
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.2e-45 186.8 148 66.9
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-45 186.0 119 84.9
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.7e-45 185.7 150 68.7
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.5e-45 184.9 119 84.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.5e-45 184.9 119 84.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.5e-45 184.9 150 68.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-44 183.7 121 82.6
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.7e-44 183.0 148 64.9
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.5e-43 179.9 148 70.3
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.3e-43 178.7 150 64.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.6e-42 176.4 152 67.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.1e-42 176.0 119 79.8
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.6e-42 175.3 114 84.2
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 3.6e-42 175.3 151 66.2
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.0e-42 174.1 140 64.3
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.0e-41 173.7 151 66.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.4e-41 173.3 148 64.2
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-41 172.6 114 83.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 3.0e-41 172.2 151 65.6
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.8e-41 171.0 149 65.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.8e-41 171.0 149 65.1
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 6.8e-41 171.0 144 65.3
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.5e-40 169.9 150 63.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.5e-40 169.9 148 69.6
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.6e-40 169.1 148 64.2
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.4e-40 168.7 149 64.4
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 7.5e-40 167.5 152 66.4
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.7e-39 166.4 150 63.3
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.7e-39 166.4 121 77.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.7e-39 166.4 132 70.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.2e-39 166.0 142 66.2
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 4.1e-38 161.8 141 63.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-37 160.2 144 63.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.6e-37 159.8 142 62.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.7e-37 159.1 150 63.3
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.7e-37 159.1 155 61.3
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.5e-37 158.3 118 72.0
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.7e-36 156.4 114 72.8
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.3e-36 156.0 150 62.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 7.3e-35 151.0 148 56.8
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 9.5e-35 150.6 148 57.4
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 55.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 8.0e-34 147.5 149 55.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.3e-33 146.0 148 56.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.3e-33 146.0 148 56.1
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.3e-33 146.0 149 59.1
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 57.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 58.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 55.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 55.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 55.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 55.4
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.8e-33 144.4 138 61.6
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 6.8e-33 144.4 148 56.1
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 6.8e-33 144.4 148 56.1
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 55.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 54.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 54.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.0e-32 142.9 149 59.1
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 5.8e-32 141.4 141 53.2
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.7e-31 139.8 148 56.1
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 6.4e-31 137.9 151 55.6
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.1e-30 137.1 119 63.9
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.1e-30 135.2 111 64.9
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 151 56.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.8e-29 131.0 150 52.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.8e-29 131.0 150 52.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.0e-28 130.6 111 64.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 5.0e-28 128.3 149 55.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.3e-27 125.6 125 57.6
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 4.7e-26 121.7 148 45.9
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.4e-23 111.3 79 75.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.0e-20 102.4 119 55.5
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 8.6e-20 100.9 75 69.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.1e-18 96.3 103 58.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.8e-17 91.3 103 55.3
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.5e-16 90.1 72 70.8
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.4e-16 89.0 59 81.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-14 84.0 89 53.9
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-14 82.8 69 62.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.6e-13 80.1 62 72.6
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.6e-13 80.1 92 55.4
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 6.0e-13 78.2 89 50.6
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.5e-11 72.8 92 51.1
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.1e-10 69.7 144 43.8
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.1e-10 69.7 144 43.8
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 2.8e-10 69.3 136 39.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 5.2e-09 65.1 130 34.6
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 7.6e-08 61.2 90 48.9
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-07 60.1 69 55.1


User provided reference genes

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