Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.6e-187 659.4 377 100.0
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 6.1e-163 577.8 380 86.8
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 5.6e-132 474.9 428 69.4
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.6e-131 473.4 428 70.1
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.4e-122 443.0 422 65.6
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.0e-121 439.9 418 67.5
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.7e-120 436.8 418 67.0
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 6.6e-117 424.9 409 65.5
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 4.4e-113 412.1 376 67.6
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.7e-109 400.2 418 62.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.4e-105 386.0 332 67.5
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 8.1e-99 364.8 407 59.7
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.8e-98 363.6 413 58.4
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 3.4e-97 359.4 422 59.0
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.7e-96 357.1 409 58.9
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 8.4e-96 354.8 419 56.3
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.9e-95 353.6 409 58.7
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.2e-95 352.8 337 67.4
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.2e-95 352.4 424 57.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.5e-95 352.1 419 55.8
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 9.3e-95 351.3 416 57.7
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 9.3e-95 351.3 410 55.4
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.5e-94 349.4 409 58.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.3e-93 347.4 416 57.5
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.5e-92 344.0 398 59.3
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.9e-92 343.6 431 57.1
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 9.6e-92 341.3 413 59.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.3e-91 340.9 379 55.7
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.3e-91 340.9 408 60.0
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 4.8e-91 339.0 390 55.1
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 8.2e-91 338.2 408 57.8
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 9.0e-90 334.7 420 55.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 3.4e-89 332.8 391 59.3
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 4.5e-89 332.4 426 54.0
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 2.9e-88 329.7 417 55.4
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 5.5e-87 325.5 411 56.2
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.0e-85 321.2 403 56.1
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.8e-85 320.5 431 53.8
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 8.7e-85 318.2 426 54.7
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.1e-84 317.8 376 52.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.9e-84 317.0 353 54.1
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.5e-84 316.6 328 57.3
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 4.3e-84 315.8 414 53.1
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.1e-82 311.2 377 58.4
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.1e-82 311.2 427 50.8
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.8e-82 310.5 410 54.1
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.4e-82 310.1 386 50.0
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 4.1e-82 309.3 410 54.4
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 5.3e-82 308.9 409 53.5
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 6.9e-82 308.5 432 52.1
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 9.0e-82 308.1 409 53.3
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 5.5e-79 298.9 454 47.6
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.2e-78 297.7 399 52.9
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.6e-78 296.2 456 46.9
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 4.6e-78 295.8 403 53.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 7.9e-78 295.0 337 54.3
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.3e-77 293.5 375 50.9
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.5e-76 290.8 409 51.8
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 4.4e-76 289.3 365 54.8
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.7e-75 287.3 253 64.8
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.7e-75 287.3 346 57.2
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.7e-75 286.2 404 52.2
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 3.7e-75 286.2 381 51.4
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.1e-74 284.6 396 52.5
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.4e-74 283.5 333 54.1
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.2e-73 281.2 336 53.3
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.6e-73 280.0 392 52.3
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 6.5e-72 275.4 403 45.9
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 5.5e-71 272.3 413 46.0
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 6.1e-70 268.9 235 64.7
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.0e-69 268.1 231 64.1
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.8e-69 267.3 427 45.9
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.3e-69 266.9 402 45.8
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 3.9e-69 266.2 337 50.7
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.2e-69 265.8 389 51.2
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 2.0e-68 263.8 377 52.0
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 9.7e-68 261.5 409 49.9
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.2e-67 260.4 353 51.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.1e-66 258.1 386 51.3
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.4e-66 256.9 262 55.0
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 2.4e-66 256.9 251 59.4
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 9.1e-66 255.0 375 51.5
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 9.1e-66 255.0 519 43.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.5e-65 253.1 390 50.0
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 3.5e-65 253.1 379 52.2
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 4.5e-65 252.7 365 48.8
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-64 251.1 390 50.0
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 6.5e-64 248.8 382 50.3
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 8.5e-64 248.4 375 50.9
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.1e-63 248.1 233 60.5
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 9.4e-63 245.0 390 48.2
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.6e-62 244.2 334 50.3
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.6e-62 244.2 339 49.0
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 2.1e-62 243.8 334 50.3
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.1e-62 243.8 386 51.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.0e-61 241.5 384 52.1
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 1.0e-61 241.5 417 45.3
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.6e-60 236.9 390 48.5
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 8.2e-59 231.9 376 50.3
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.1e-58 231.5 357 51.3
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.3e-58 229.2 383 48.3
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.3e-58 229.2 311 46.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.2e-57 228.0 386 50.3
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.0e-56 224.9 376 48.4
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.3e-56 224.6 378 47.9
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.2e-55 219.5 340 47.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 9.4e-55 218.4 375 48.3
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.4e-53 214.5 326 50.9
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.5e-52 211.1 322 46.0
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.2e-51 207.2 393 46.3
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 8.3e-51 205.3 356 45.5
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 4.5e-49 199.5 387 42.1
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 5.0e-48 196.1 264 48.9
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.2e-47 193.4 232 51.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.8e-42 177.6 142 67.6
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 2.5e-39 167.2 342 37.1
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 5.6e-39 166.0 375 42.1
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.4e-37 161.4 224 47.3
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.0e-36 157.5 298 40.6
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.9e-35 152.9 265 42.3
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-34 151.0 380 39.7
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.8e-30 137.1 128 64.8
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 6.6e-24 115.9 144 49.3
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.4e-20 103.6 85 63.5
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.4e-20 103.2 360 35.8
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 5.4e-18 96.3 220 39.1
VMungo1383G1566 Vigna mungo HOM05D004981 ORTHO05D005635 1.3e-16 91.7 78 67.9
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 4.3e-15 86.7 74 68.9
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 5.6e-15 86.3 243 31.7
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.2e-13 79.7 105 42.9
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.4e-12 77.0 85 51.8
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.7e-09 67.4 146 37.7
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.7e-08 64.7 249 25.3
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 6.6e-08 62.8 101 36.6
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 1.5e-07 61.6 48 56.2
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 1.5e-07 61.6 82 52.4
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 3.3e-07 60.5 105 41.0
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 3.3e-07 60.5 146 39.0
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 1.6e-06 58.2 64 48.4


User provided reference genes

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