Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 4.0e-190 667.9 337 100.0
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.5e-176 622.9 331 95.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 7.6e-173 610.5 331 91.8
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 3.9e-161 571.6 331 85.2
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 8.7e-161 570.5 331 84.9
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.5e-160 569.7 331 84.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 7.4e-160 567.4 331 84.0
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 1.8e-158 562.8 331 81.9
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 9.0e-158 560.5 331 84.9
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 7.9e-154 547.4 331 80.4
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.4e-153 546.6 327 80.4
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 1.1e-150 537.0 329 79.6
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.4e-150 535.8 326 80.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 6.9e-150 534.3 326 79.8
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 6.9e-150 534.3 327 79.2
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 6.9e-150 534.3 326 79.1
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 5.9e-149 531.2 325 79.7
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.3e-148 530.0 326 77.3
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.7e-148 529.6 326 78.8
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.2e-148 529.3 329 78.4
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.8e-148 528.5 328 78.0
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 3.8e-148 528.5 331 77.9
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 8.5e-148 527.3 325 77.5
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.1e-147 526.9 327 78.0
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.1e-147 526.9 326 78.8
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.4e-147 526.6 329 78.1
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 2.5e-147 525.8 327 78.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 9.4e-147 523.9 327 77.1
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 9.4e-147 523.9 327 77.1
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 9.4e-147 523.9 327 78.9
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-146 523.5 327 77.7
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 6.1e-146 521.2 325 77.8
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 6.1e-146 521.2 326 76.4
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 6.1e-146 521.2 327 77.4
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 3.0e-145 518.8 328 76.5
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 8.8e-145 517.3 331 76.4
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.1e-144 516.9 327 75.8
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 2.0e-144 516.2 329 75.4
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.3e-144 515.4 327 76.8
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 3.3e-144 515.4 329 75.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.4e-144 515.0 327 77.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 4.4e-144 515.0 327 76.8
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 5.7e-144 514.6 329 76.3
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 5.7e-144 514.6 327 76.8
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 5.7e-144 514.6 327 74.3
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.3e-143 513.5 327 75.8
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 1.7e-143 513.1 324 76.9
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 1.7e-143 513.1 330 76.1
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 2.8e-143 512.3 329 73.9
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 3.7e-143 511.9 326 76.7
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 4.8e-143 511.5 327 74.6
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.1e-142 510.4 327 75.8
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 4.1e-142 508.4 324 76.5
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 5.3e-142 508.1 330 76.1
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 7.0e-142 507.7 326 76.7
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 7.0e-142 507.7 327 75.2
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 9.1e-142 507.3 325 75.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 9.1e-142 507.3 325 75.4
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 9.1e-142 507.3 327 74.0
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 9.1e-142 507.3 327 75.5
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.2e-141 506.9 330 74.2
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-141 506.9 324 76.2
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.2e-141 506.9 345 73.0
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 2.0e-141 506.1 324 77.5
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 3.5e-141 505.4 330 74.5
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 3.5e-141 505.4 330 74.5
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 5.9e-141 504.6 332 75.3
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 7.7e-141 504.2 330 74.2
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 7.7e-141 504.2 327 75.2
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 7.7e-141 504.2 327 75.8
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.0e-140 503.8 331 73.1
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.7e-140 503.1 327 74.6
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 2.2e-140 502.7 330 75.5
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 2.9e-140 502.3 330 74.2
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 5.0e-140 501.5 325 75.4
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 5.0e-140 501.5 330 73.9
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 8.5e-140 500.7 313 75.4
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 8.5e-140 500.7 329 74.8
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.9e-139 499.6 326 73.6
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 3.2e-139 498.8 330 73.6
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.2e-139 498.8 327 74.9
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 7.2e-139 497.7 327 74.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 6.7e-137 491.1 400 63.8
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 4.4e-136 488.4 358 68.4
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 1.3e-135 486.9 326 73.9
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.3e-135 486.9 358 68.4
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 5.3e-134 481.5 326 73.0
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.0e-132 477.2 317 73.8
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 8.5e-132 474.2 327 69.7
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 5.2e-129 464.9 345 67.8
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.2e-128 463.8 329 69.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.4e-126 456.8 327 67.9
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 6.8e-121 438.0 327 67.3
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.2e-119 433.0 327 64.8
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 7.7e-117 424.5 282 73.4
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 1.4e-113 413.7 327 64.8
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 1.0e-108 397.5 333 59.8
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.3e-108 397.1 345 62.0
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.9e-108 395.6 282 70.9
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.6e-107 391.7 330 60.9
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 7.3e-107 391.3 349 59.6
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 8.0e-106 387.9 270 68.9
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 1.4e-105 387.1 225 83.6
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 9.2e-102 374.4 335 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.2e-98 364.0 327 56.3
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.5e-96 357.1 329 56.2
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.7e-95 352.4 329 55.9
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-93 347.4 223 76.7
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.3e-92 343.2 336 53.3
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 5.6e-91 338.6 330 51.8
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-90 337.4 333 54.1
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-90 337.4 332 53.3
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-90 335.9 330 53.6
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-89 334.0 330 51.8
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-87 327.0 331 53.5
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 6.4e-87 325.1 215 74.4
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-85 320.9 332 52.7
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 2.7e-85 319.7 326 51.5
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 5.1e-84 315.5 330 50.3
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-83 313.2 329 51.1
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 3.3e-83 312.8 329 50.5
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 4.3e-83 312.4 331 50.2
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 7.3e-83 311.6 330 49.7
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.8e-81 305.1 329 49.8
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 2.0e-80 303.5 233 68.2
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-76 291.2 329 47.7
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-76 290.8 330 47.6
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-74 282.7 330 47.3
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.8e-73 280.4 326 46.9
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 5.6e-67 258.8 264 51.1
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.3e-60 237.7 148 77.7
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.3e-59 233.0 144 76.4
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.2e-56 224.6 173 68.8
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-55 219.9 216 53.2
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 3.8e-55 219.5 141 73.0
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 6.5e-55 218.8 181 63.5
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 9.0e-49 198.4 125 77.6
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 5.9e-48 195.7 195 50.8
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-46 191.4 177 52.5
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.9e-46 190.7 326 39.0
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 5.1e-44 182.6 210 49.5
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 9.0e-41 171.8 136 66.2
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 1.2e-40 171.4 158 57.0
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.0e-40 170.6 105 78.1
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.5e-35 153.7 363 32.0
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 4.7e-29 132.9 350 30.0
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.2e-24 118.2 332 28.6
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.6e-24 117.9 342 28.9
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 3.5e-24 116.7 69 72.5
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 4.5e-24 116.3 79 70.9
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-21 107.5 98 54.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 8.0e-21 105.5 288 28.8
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 3.7e-18 96.7 333 30.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 7.0e-17 92.4 365 26.8
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.6e-16 91.3 57 78.9
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 2.7e-16 90.5 67 64.2
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 2.2e-15 87.4 177 35.0
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.9e-14 84.3 58 69.0
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.5e-14 84.0 84 54.8
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 2.3e-12 77.4 87 48.3
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.6e-11 73.9 45 73.3
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.8e-11 72.0 147 35.4
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 2.2e-10 70.9 48 72.9
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 2.8e-10 70.5 46 73.9
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 6.3e-10 69.3 51 66.7
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 8.3e-10 68.9 94 42.6
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.5e-08 63.5 154 32.5
Phvul.003G083100 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 5.9e-08 62.8 33 93.9
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 5.5e-06 56.2 141 34.0


User provided reference genes

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