Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.1e-160 568.9 281 100.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.6e-144 516.2 281 90.4
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 4.2e-140 501.5 281 88.3
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 5.4e-140 501.1 283 88.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 5.1e-122 441.4 288 78.5
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.9e-121 439.5 279 80.3
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.2e-118 430.3 280 78.2
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 2.1e-115 419.5 280 76.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 4.8e-112 408.3 285 75.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.1e-111 407.1 288 74.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 5.0e-109 398.3 288 72.6
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 6.7e-106 387.9 284 69.7
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 6.7e-106 387.9 287 68.6
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 5.7e-105 384.8 278 69.1
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 9.7e-105 384.0 283 68.9
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.3e-104 383.6 273 68.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.3e-104 383.6 291 66.7
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 3.7e-104 382.1 286 68.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.7e-104 382.1 275 69.1
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 6.3e-104 381.3 279 68.5
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.8e-103 379.8 282 68.8
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 9.1e-103 377.5 286 68.2
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.2e-102 377.1 276 68.1
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.0e-102 376.3 284 66.9
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 4.5e-102 375.2 281 68.0
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 5.9e-102 374.8 275 67.3
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 8.5e-101 370.9 280 66.4
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 3.2e-100 369.0 244 73.8
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 4.2e-100 368.6 297 65.0
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 9.4e-100 367.5 286 63.6
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.6e-99 366.7 282 66.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.7e-99 365.9 277 65.7
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.6e-99 365.5 282 64.9
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 6.1e-99 364.8 283 66.8
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.0e-98 364.0 280 68.2
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 3.9e-98 362.1 224 78.6
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.9e-98 362.1 285 65.6
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.7e-98 361.3 281 63.7
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.6e-97 359.4 282 63.1
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 2.6e-97 359.4 252 69.0
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 3.3e-97 359.0 261 66.7
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 9.7e-97 357.5 274 63.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.2e-96 356.3 283 64.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 2.8e-96 355.9 275 63.6
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.8e-96 355.9 283 64.3
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.7e-96 355.5 266 65.8
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.3e-96 354.8 284 64.8
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 8.2e-96 354.4 271 65.7
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.4e-95 353.6 286 62.6
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.4e-95 353.6 271 65.7
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.8e-95 353.2 224 76.3
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.4e-95 352.8 275 64.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 4.5e-94 348.6 278 61.5
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.5e-94 348.6 283 62.5
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 5.9e-94 348.2 284 60.9
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 7.7e-94 347.8 280 63.9
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.0e-93 347.4 242 68.6
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.3e-93 347.1 275 62.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 2.9e-93 345.9 280 63.2
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 2.9e-93 345.9 280 63.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 3.2e-92 342.4 302 58.6
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.2e-92 342.4 263 65.4
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 4.2e-92 342.0 281 59.4
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 5.5e-92 341.7 277 64.3
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.2e-92 341.3 283 60.1
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 9.4e-92 340.9 277 63.2
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.2e-91 340.5 242 66.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.1e-91 339.7 218 72.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 7.9e-91 337.8 278 61.9
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.4e-90 337.0 276 63.4
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.8e-90 336.7 222 73.4
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 3.0e-90 335.9 289 59.9
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.5e-89 333.6 284 62.0
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.3e-88 330.5 220 70.5
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.7e-88 330.1 284 60.2
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.7e-88 330.1 308 57.1
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.7e-88 330.1 222 73.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.8e-88 329.3 245 69.0
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.8e-88 329.3 284 60.6
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 3.7e-88 328.9 224 69.2
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.7e-88 328.9 241 70.1
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 6.3e-88 328.2 217 70.0
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 6.3e-88 328.2 221 72.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 7.0e-87 324.7 217 69.1
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 1.2e-86 323.9 249 65.9
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.2e-86 323.9 250 64.4
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.5e-86 322.0 211 72.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.3e-85 320.5 261 60.2
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.8e-85 318.9 242 65.7
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.5e-84 317.0 340 53.5
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 9.4e-84 314.3 242 64.0
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 9.4e-84 314.3 242 64.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.4e-84 314.3 224 69.6
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.0e-82 310.8 242 63.6
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.0e-82 310.8 242 63.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.3e-81 305.8 249 62.7
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 7.5e-81 304.7 278 56.5
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 3.7e-80 302.4 262 59.9
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.1e-79 300.8 319 53.0
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.1e-79 299.3 222 66.7
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.1e-79 298.9 224 67.9
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 4.1e-79 298.9 285 61.1
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.9e-76 290.0 216 68.5
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.9e-76 290.0 183 76.5
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.6e-75 287.0 328 50.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.6e-75 285.8 169 79.9
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.2e-74 282.0 246 60.2
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.0e-73 280.0 203 70.4
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.1e-71 274.2 190 71.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.5e-65 253.8 273 54.2
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.6e-65 253.1 166 71.7
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 7.5e-57 224.9 209 51.7
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 3.7e-56 222.6 210 51.4
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 9.2e-55 218.0 227 46.7
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.8e-54 214.9 146 70.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.3e-53 214.2 242 51.2
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 9.5e-52 208.0 213 46.5
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.6e-51 207.2 148 72.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.6e-51 206.1 133 74.4
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 7.0e-47 191.8 214 46.3
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 5.6e-44 182.2 107 83.2
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-41 174.5 106 76.4
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 6.0e-30 135.6 189 35.4
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 5.1e-29 132.5 129 53.5
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.5e-25 120.9 99 60.6
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.3e-24 117.9 99 58.6
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 5.4e-23 112.5 81 63.0
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 6.6e-21 105.5 206 33.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 9.6e-20 101.7 71 64.8
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.1e-19 100.5 130 45.4
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.4e-18 97.1 93 57.0
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.5e-17 94.4 117 46.2
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.2e-15 86.7 83 49.4
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.6e-09 67.0 98 41.8
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 5.8e-09 65.9 47 63.8
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 9.3e-07 58.5 52 50.0


User provided reference genes

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