Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.2e-103 377.5 192 100.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.9e-84 315.5 192 85.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.8e-81 306.2 192 81.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-76 290.0 190 77.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.4e-75 285.8 189 77.8
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.2e-75 285.0 190 75.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.0e-74 281.2 189 74.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-71 273.5 183 76.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-71 272.7 183 75.4
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.4e-70 270.0 190 75.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-70 269.6 168 78.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-69 266.5 168 77.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-69 266.5 168 76.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.5e-69 265.0 168 76.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.5e-69 265.0 168 75.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 5.8e-69 264.6 168 75.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-68 263.8 168 75.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.0e-68 263.8 168 76.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.7e-68 263.1 168 76.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.9e-68 261.5 168 76.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-67 260.4 168 76.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.4e-67 260.0 187 70.6
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-67 259.2 168 73.8
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.2e-67 258.8 168 75.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.2e-67 258.5 168 75.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.2e-67 258.5 168 75.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 7.1e-67 257.7 168 72.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.1e-67 257.7 168 75.6
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 9.3e-67 257.3 168 74.4
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 9.3e-67 257.3 168 76.2
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.5e-66 255.4 168 75.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.6e-66 255.0 168 73.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.6e-66 255.0 168 73.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 6.0e-66 254.6 168 74.4
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.0e-65 253.8 168 74.4
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.0e-65 253.8 178 71.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.3e-65 253.4 168 75.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.8e-65 253.1 168 73.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.3e-65 252.7 179 70.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.1e-65 251.5 168 72.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.7e-65 250.8 168 72.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-64 250.0 168 73.8
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.5e-64 250.0 167 73.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-64 249.6 160 76.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.3e-64 248.8 167 73.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.3e-64 248.8 168 71.4
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.3e-64 248.8 168 73.2
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.3e-64 248.8 170 74.1
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.3e-64 248.8 155 77.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.3e-64 248.8 168 73.8
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.3e-64 248.4 168 71.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 4.3e-64 248.4 168 71.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.3e-64 248.4 167 72.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.3e-64 248.4 167 73.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.7e-64 248.1 168 71.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.7e-64 248.1 168 71.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 7.4e-64 247.7 167 73.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 7.4e-64 247.7 168 71.4
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 9.7e-64 247.3 168 70.8
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 9.7e-64 247.3 175 69.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 9.7e-64 247.3 166 72.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-63 246.9 168 72.6
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-63 246.9 168 72.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.3e-63 246.9 168 71.4
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.2e-63 246.1 168 70.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.3e-63 244.6 168 72.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 8.2e-63 244.2 168 70.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 8.2e-63 244.2 168 69.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 71.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-62 243.8 158 76.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 69.4
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.4e-62 243.4 174 67.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-62 243.4 167 71.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.1e-62 241.9 168 68.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.1e-62 241.9 159 74.2
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.1e-62 241.9 171 67.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.3e-62 241.5 171 66.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 9.0e-62 240.7 173 67.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.0e-62 240.7 159 74.2
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-61 240.0 174 67.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-61 239.6 174 67.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.6e-61 239.2 173 67.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-61 238.8 172 69.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-61 238.8 172 69.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.5e-61 238.4 168 68.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 7.6e-61 237.7 164 71.3
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-60 236.9 168 69.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.7e-60 236.5 167 69.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.2e-60 236.1 167 71.3
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.9e-60 235.7 168 66.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.8e-60 235.3 168 68.5
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 3.8e-60 235.3 168 68.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.5e-60 234.6 170 65.9
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.5e-60 234.6 177 66.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 8.5e-60 234.2 168 67.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-59 233.8 172 67.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.9e-59 233.0 166 67.5
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.5e-59 232.6 176 64.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.2e-59 232.3 175 65.7
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.5e-59 231.5 168 67.9
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 9.4e-59 230.7 168 67.3
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-58 230.3 168 68.5
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.6e-58 228.8 169 68.0
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.6e-58 228.4 168 64.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 4.6e-58 228.4 171 64.9
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.6e-58 228.4 168 67.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 7.9e-58 227.6 168 67.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-57 226.5 172 62.8
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.0e-57 225.7 168 64.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.0e-57 225.7 171 64.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.9e-57 225.3 166 66.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.1e-57 224.9 171 66.7
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 5.1e-57 224.9 175 65.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.1e-57 224.9 168 62.5
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.7e-57 224.6 165 66.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.5e-56 222.6 181 60.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.5e-56 222.6 167 67.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.3e-56 221.9 158 68.4
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.3e-55 220.3 171 64.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.8e-55 219.2 166 66.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.1e-54 217.2 167 64.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.4e-54 216.9 181 60.2
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.1e-54 215.7 167 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.3e-54 214.9 157 66.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 6.9e-54 214.5 171 60.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.2e-53 213.8 181 65.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-53 213.4 161 66.5
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 3.4e-53 212.2 167 62.3
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.7e-52 209.9 164 60.4
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.0e-52 208.4 159 63.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-51 207.2 131 74.0
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.2e-51 205.3 162 64.8
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.2e-50 203.8 172 62.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-50 203.8 172 62.2
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.6e-50 203.4 169 62.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.1e-50 201.4 165 63.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-49 200.3 165 63.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.9e-49 198.7 131 71.0
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.7e-49 198.0 175 57.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-48 197.2 179 60.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.0e-48 196.4 156 60.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 3.3e-48 195.7 174 55.2
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.7e-48 194.9 159 61.6
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.7e-47 192.2 168 58.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.4e-46 189.5 163 59.5
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.4e-45 185.7 163 54.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 4.5e-45 185.3 168 56.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.7e-45 184.5 137 65.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.8e-44 182.2 166 59.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.5e-43 178.3 132 67.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.6e-42 176.8 137 67.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.7e-41 171.4 130 66.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.1e-40 170.6 157 51.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.0e-40 169.9 174 52.9
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.6e-40 169.5 141 61.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.7e-40 168.3 127 65.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-39 166.4 125 65.6
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.3e-39 164.9 159 59.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.0e-37 159.8 166 53.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.0e-37 159.8 173 50.9
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.9e-37 158.3 166 53.0
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.8e-36 155.6 166 51.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.2e-33 145.2 116 66.4
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.7e-32 141.7 97 71.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.3e-28 130.6 90 68.9
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.2e-28 129.8 148 43.2
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.5e-27 126.3 89 70.8
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-26 123.2 168 47.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.7e-26 122.9 94 61.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 8.8e-25 117.9 91 62.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 3.1e-22 109.4 73 65.8
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.7e-16 88.6 79 55.7
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.5e-11 73.9 51 70.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-09 66.6 77 48.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 3.1e-09 66.2 172 30.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 5.8e-08 62.0 177 30.5
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-06 57.4 64 39.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.4e-06 57.4 106 37.7
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.4e-06 56.6 58 44.8
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 3.2e-06 56.2 74 43.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 9.2e-06 54.7 33 75.8


User provided reference genes

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