Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.9e-44 182.2 95 100.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.0e-42 176.4 95 96.8
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 3.9e-42 174.5 95 95.8
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 2.0e-41 172.2 95 94.7
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 2.4e-39 165.2 95 88.4
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 2.6e-38 161.8 95 88.4
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.1e-36 156.4 96 85.4
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.1e-36 156.4 95 82.1
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.5e-33 146.0 94 81.9
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 4.4e-33 144.4 96 81.2
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.3e-32 142.9 95 76.8
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 3.7e-32 141.4 95 76.8
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 6.3e-32 140.6 95 74.7
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.4e-31 139.4 96 74.0
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 1.4e-31 139.4 97 79.4
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.4e-31 138.7 95 70.5
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 4.1e-31 137.9 95 74.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 5.3e-31 137.5 95 76.8
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 5.3e-31 137.5 95 71.6
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 9.1e-31 136.7 95 71.6
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 2.0e-30 135.6 95 73.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 2.0e-30 135.6 95 73.7
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.0e-30 135.6 92 71.7
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 3.5e-30 134.8 95 72.6
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 3.5e-30 134.8 95 71.6
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 4.5e-30 134.4 95 73.7
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 4.5e-30 134.4 95 69.5
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 5.9e-30 134.0 95 72.6
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 7.7e-30 133.7 95 73.7
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 3.8e-29 131.3 95 68.4
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 3.8e-29 131.3 86 70.9
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.5e-29 130.6 95 66.3
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.9e-28 129.0 95 65.3
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.9e-28 129.0 95 66.3
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 2.5e-28 128.6 95 70.5
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.2e-28 128.3 96 68.8
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 3.2e-28 128.3 97 71.1
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 4.2e-28 127.9 96 68.8
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 5.5e-28 127.5 84 77.4
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 5.5e-28 127.5 95 67.4
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 9.4e-28 126.7 85 68.2
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.6e-27 125.9 96 67.7
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 2.7e-27 125.2 95 65.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 2.7e-27 125.2 95 68.4
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 4.7e-27 124.4 93 72.0
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 6.1e-27 124.0 92 72.8
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 8.0e-27 123.6 91 68.1
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.0e-26 123.2 95 64.2
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.4e-26 122.9 96 66.7
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.0e-26 121.7 95 63.2
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.0e-26 121.7 95 63.2
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 3.0e-26 121.7 97 71.1
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 5.2e-26 120.9 93 68.8
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 6.7e-26 120.6 77 77.9
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.8e-26 120.2 95 64.2
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.2e-25 119.8 95 64.2
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 1.5e-25 119.4 95 63.2
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.5e-25 119.4 97 66.0
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.5e-25 119.4 95 65.3
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.5e-25 119.4 94 70.2
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.0e-25 119.0 95 63.2
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.0e-25 119.0 95 63.2
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 3.3e-25 118.2 96 63.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 3.3e-25 118.2 100 61.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 4.4e-25 117.9 102 63.7
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 9.7e-25 116.7 92 65.2
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.7e-24 115.9 101 60.4
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.7e-24 115.9 102 62.7
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 2.2e-24 115.5 101 64.4
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 6.3e-24 114.0 101 59.4
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 8.2e-24 113.6 95 67.4
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 8.2e-24 113.6 94 67.0
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 3.1e-23 111.7 101 60.4
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 5.3e-23 110.9 104 60.6
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 9.1e-23 110.2 75 72.0
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.6e-22 109.4 95 66.3
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 1.6e-22 109.4 105 61.0
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.0e-22 109.0 95 68.4
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 2.0e-22 109.0 105 58.1
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.7e-22 108.6 102 55.9
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 4.5e-22 107.8 83 67.5
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 4.5e-22 107.8 105 58.1
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.0e-21 106.7 102 56.9
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.0e-21 106.7 102 57.8
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.3e-21 106.3 106 58.5
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.3e-21 106.3 100 57.0
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 104 55.8
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 2.9e-21 105.1 101 56.4
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 3.8e-21 104.8 95 60.0
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 5.0e-21 104.4 102 55.9
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 5.0e-21 104.4 105 56.2
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.5e-21 104.0 102 55.9
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 8.5e-21 103.6 103 57.3
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.1e-20 103.2 106 53.8
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.1e-20 103.2 101 60.4
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.9e-20 102.4 71 70.4
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.5e-20 102.1 73 67.1
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.2e-20 101.7 96 57.3
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 3.2e-20 101.7 102 55.9
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.2e-20 101.3 107 56.1
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 7.2e-20 100.5 96 57.3
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 7.2e-20 100.5 80 67.5
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 9.4e-20 100.1 96 57.3
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.2e-19 99.8 104 53.8
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.2e-19 99.8 96 57.3
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.6e-19 99.4 96 56.2
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.6e-19 99.4 104 52.9
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.7e-19 98.6 88 61.4
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 3.6e-19 98.2 101 52.5
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.6e-19 98.2 96 59.4
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 3.6e-19 98.2 96 55.2
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 3.6e-19 98.2 90 57.8
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.7e-19 97.8 75 57.3
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 6.1e-19 97.4 106 51.9
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 6.1e-19 97.4 97 57.7
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 6.1e-19 97.4 97 57.7
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 6.1e-19 97.4 105 55.2
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 8.0e-19 97.1 96 55.2
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 8.0e-19 97.1 105 54.3
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.0e-18 96.7 96 55.2
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.0e-18 96.7 105 52.4
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.0e-18 96.7 104 51.0
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.4e-18 96.3 105 51.4
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.4e-18 96.3 106 52.8
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 1.4e-18 96.3 105 53.3
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.4e-18 96.3 105 51.4
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.8e-18 95.9 103 54.4
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 1.8e-18 95.9 73 69.9
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.3e-18 95.5 96 56.2
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.3e-18 95.5 96 56.2
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 4.0e-18 94.7 101 53.5
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 8.8e-18 93.6 96 56.2
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 1.5e-17 92.8 97 53.6
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.5e-17 92.8 98 52.0
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.0e-17 92.4 103 51.5
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.6e-17 92.0 97 55.7
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.6e-17 92.0 97 55.7
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.6e-17 92.0 97 55.7
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 3.4e-17 91.7 105 53.3
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 4.4e-17 91.3 101 51.5
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 5.7e-17 90.9 96 54.2
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 5.7e-17 90.9 104 53.8
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 7.5e-17 90.5 97 52.6
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 7.5e-17 90.5 96 54.2
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 9.8e-17 90.1 81 59.3
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 9.8e-17 90.1 81 61.7
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.7e-16 89.4 95 52.6
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 1.7e-16 89.4 83 56.6
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 2.8e-16 88.6 97 54.6
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.8e-16 88.6 97 54.6
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 2.8e-16 88.6 97 54.6
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 3.7e-16 88.2 99 52.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 4.8e-16 87.8 96 53.1
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 6.3e-16 87.4 97 52.6
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 6.3e-16 87.4 96 53.1
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 6.3e-16 87.4 97 52.6
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 6.3e-16 87.4 97 52.6
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.3e-16 87.0 95 50.5
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-15 86.3 97 51.5
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-15 86.3 97 51.5
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.8e-15 85.9 95 50.5
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 3.1e-15 85.1 102 52.0
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 5.4e-15 84.3 97 50.5
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 5.4e-15 84.3 97 50.5
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 7.0e-15 84.0 97 51.5
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 7.0e-15 84.0 97 51.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.2e-14 83.2 101 48.5
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.6e-14 82.8 103 51.5
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-14 81.6 82 56.1
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 3.5e-14 81.6 82 56.1
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 3.5e-14 81.6 82 56.1
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 4.5e-14 81.3 98 50.0
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.9e-13 78.6 100 53.0
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 6.5e-13 77.4 76 57.9
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 6.5e-13 77.4 76 57.9
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.5e-12 76.3 75 57.3
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 3.2e-12 75.1 76 55.3
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 4.2e-12 74.7 89 49.4
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 3.6e-11 71.6 65 53.8
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 8.0e-11 70.5 80 51.2
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 9.8e-09 63.5 85 47.1
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 9.8e-09 63.5 83 51.8
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 9.8e-09 63.5 75 50.7
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 2.8e-08 62.0 78 46.2
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 3.7e-08 61.6 51 52.9
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.5e-06 54.7 46 67.4


User provided reference genes

Program Settings