Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.6e-169 599.4 305 100.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 8.7e-168 593.6 305 98.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 3.8e-163 578.2 305 96.4
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.9e-162 575.9 305 95.1
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.2e-162 575.1 305 94.8
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 6.1e-161 570.9 305 93.4
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.8e-160 569.3 305 93.1
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.8e-160 569.3 305 93.1
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.4e-157 559.7 305 92.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.1e-157 558.1 305 88.9
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 9.0e-157 557.0 305 91.5
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.0e-155 553.5 305 87.9
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.7e-155 552.7 305 87.2
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.2e-155 552.4 305 88.2
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.4e-154 549.7 305 89.8
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 3.2e-154 548.5 305 89.5
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.6e-153 544.7 305 89.8
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 6.1e-153 544.3 305 89.8
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 7.9e-153 543.9 304 88.5
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.8e-152 542.7 305 85.2
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 87.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 85.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 88.2
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 85.2
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 84.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 85.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 87.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 85.9
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 7.4e-151 537.3 301 89.4
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 84.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 86.2
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 86.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 87.5
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 83.6
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 85.9
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 85.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.8e-149 532.7 307 83.1
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 83.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 86.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 82.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 85.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.1e-149 531.6 301 88.4
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 83.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 84.3
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 82.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 85.2
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 85.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 82.6
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.8e-147 525.0 300 86.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 82.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 83.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 83.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 80.7
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 82.6
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 81.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.2e-145 520.0 303 84.5
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 81.6
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 81.3
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.3
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 83.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 81.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 80.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 82.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.0e-144 515.4 326 78.8
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 81.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 81.6
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 79.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 80.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 80.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 80.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 79.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.8e-141 506.1 302 82.8
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 7.0e-141 504.2 307 81.1
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-140 501.9 302 79.8
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 3.5e-140 501.9 372 68.8
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.7e-140 500.7 305 81.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.9e-139 498.8 308 77.9
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 6.5e-139 497.7 305 79.7
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.5e-139 497.3 305 80.3
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 8.5e-139 497.3 305 77.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.2e-138 495.0 330 73.9
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 9.4e-138 493.8 303 76.9
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 5.2e-136 488.0 303 79.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 8.8e-136 487.3 304 78.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.4e-135 485.0 388 66.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 76.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.5e-135 484.2 307 74.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 3.7e-134 481.9 307 75.6
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.4e-133 479.9 307 73.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 74.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 74.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 74.5
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.8e-133 479.6 307 73.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 75.2
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 5.3e-133 478.0 306 74.5
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.3e-133 478.0 305 78.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 5.3e-133 478.0 304 77.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 5.3e-133 478.0 304 77.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.0e-132 476.1 305 74.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 76.6
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.7e-131 473.0 304 76.6
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.6e-121 438.7 300 71.3
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 4.0e-120 435.3 306 68.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 6.8e-120 434.5 304 68.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.4e-117 424.9 304 66.4
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 3.5e-116 422.2 305 70.8
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.5e-114 416.0 258 81.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 4.9e-110 401.7 302 63.6
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.2e-108 397.1 235 83.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 5.0e-107 391.7 303 63.7
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.7e-102 376.7 225 84.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.6e-100 370.2 225 78.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.1e-96 357.5 311 56.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.9e-96 354.4 228 80.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.5e-92 342.4 207 79.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.5e-68 262.7 160 77.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.6e-68 262.3 181 71.8
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.1e-64 249.6 143 81.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.4e-63 246.1 149 75.8
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 5.1e-59 232.3 154 72.7
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 3.3e-58 229.6 153 70.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.2e-54 216.9 300 47.7
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.4e-39 166.4 80 93.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 4.5e-39 166.0 136 56.6
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.9e-38 163.3 125 64.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 6.5e-38 162.2 83 89.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.4e-37 161.0 205 48.3
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 7.2e-37 158.7 299 34.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.6e-36 157.5 79 88.6
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.1e-36 155.6 85 82.4
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.0e-35 154.8 80 83.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.4e-35 154.5 306 34.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-28 131.3 79 77.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.8e-25 120.2 58 93.1
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.6e-23 113.6 76 69.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 9.4e-21 105.1 64 78.1
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.1e-20 104.0 60 80.0
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-18 97.4 69 82.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.3e-18 96.7 295 32.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-13 81.6 241 28.2


User provided reference genes

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