Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 3.4e-194 681.4 324 100.0
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.6e-188 662.5 324 95.7
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 3.4e-178 628.2 325 91.7
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.9e-173 612.5 325 89.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 9.6e-173 610.1 328 88.4
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 8.1e-172 607.1 314 89.5
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 4.2e-168 594.7 323 87.0
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.9e-166 588.2 329 85.4
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.9e-165 585.9 329 86.3
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 2.8e-164 582.0 315 86.3
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 2.0e-162 575.9 331 81.6
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 5.8e-162 574.3 331 81.3
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.4e-160 569.7 329 81.2
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.4e-160 569.7 329 81.2
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 7.1e-160 567.4 329 81.2
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 4.6e-159 564.7 332 79.8
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.6e-159 564.7 321 81.9
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.0e-158 563.5 326 81.0
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-158 563.1 321 81.9
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 2.3e-158 562.4 314 81.8
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 8.7e-158 560.5 329 79.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 8.7e-158 560.5 329 79.9
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.9e-157 559.3 329 79.3
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.9e-157 559.3 327 80.7
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.3e-157 558.1 321 81.3
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 5.6e-157 557.8 333 79.6
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 5.6e-157 557.8 318 82.4
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 5.6e-157 557.8 328 80.2
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.4e-157 557.4 328 80.2
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 9.6e-157 557.0 323 80.2
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.6e-157 557.0 319 81.2
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 9.6e-157 557.0 323 80.8
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.3e-156 556.6 327 81.7
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.6e-156 556.2 318 83.0
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.6e-156 556.2 326 81.9
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.1e-156 555.8 319 81.5
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 2.1e-156 555.8 319 81.5
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.8e-156 555.4 321 81.9
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.8e-156 555.4 319 81.8
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.7e-156 555.1 325 80.0
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 4.8e-156 554.7 312 82.4
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 6.2e-156 554.3 310 82.9
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 6.2e-156 554.3 317 81.7
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.8e-155 552.7 316 81.0
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.8e-155 552.7 319 81.2
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 2.4e-155 552.4 328 79.6
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.4e-155 552.4 332 78.3
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.0e-155 551.6 327 79.5
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 5.3e-155 551.2 329 78.4
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 6.9e-155 550.8 328 79.3
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 6.9e-155 550.8 328 79.3
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.9e-155 550.8 324 80.2
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 6.9e-155 550.8 317 80.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 9.0e-155 550.4 317 81.4
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.2e-154 550.1 327 79.5
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.2e-154 550.1 318 80.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.2e-154 550.1 318 79.6
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.2e-154 550.1 324 80.2
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 2.0e-154 549.3 322 77.6
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.6e-154 548.9 317 81.1
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.5e-154 548.1 317 79.8
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 4.5e-154 548.1 323 78.0
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 4.5e-154 548.1 323 79.9
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 5.8e-154 547.7 323 78.3
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 5.8e-154 547.7 312 80.8
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 7.6e-154 547.4 321 79.1
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.9e-154 547.0 319 80.9
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 9.9e-154 547.0 314 80.3
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.3e-153 546.6 317 80.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.9e-153 545.4 316 81.0
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.9e-153 545.4 316 79.4
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.9e-153 545.4 316 79.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.8e-153 545.0 320 78.1
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 4.9e-153 544.7 315 79.7
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 4.9e-153 544.7 318 80.5
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 4.9e-153 544.7 318 79.6
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 6.4e-153 544.3 328 78.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 6.4e-153 544.3 328 78.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.4e-153 544.3 323 78.9
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.4e-152 543.1 316 78.5
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.4e-152 543.1 310 81.3
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.4e-152 543.1 323 78.6
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.9e-152 542.7 324 76.5
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.9e-152 542.7 314 79.6
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 3.2e-152 542.0 326 78.8
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 4.2e-152 541.6 314 80.6
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.5e-152 541.2 316 80.4
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.2e-151 540.0 321 78.8
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.2e-151 540.0 310 81.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.1e-151 539.3 313 79.9
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 2.7e-151 538.9 322 78.6
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 2.7e-151 538.9 312 80.4
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 4.6e-151 538.1 316 79.1
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.0e-151 537.7 313 79.2
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.0e-150 537.0 313 78.0
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.3e-150 536.6 317 77.0
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 2.3e-150 535.8 313 79.9
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 3.9e-150 535.0 316 79.1
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.1e-150 534.6 317 78.9
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 6.7e-150 534.3 300 84.0
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.5e-149 532.3 313 78.6
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.6e-148 529.6 383 68.4
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 3.1e-147 525.4 321 76.3
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.5e-146 523.1 335 74.0
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 4.1e-139 498.4 294 77.9
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.3e-137 493.4 304 75.3
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 5.5e-136 488.0 313 72.2
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 7.2e-136 487.6 323 70.6
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.8e-134 483.0 307 74.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.0e-134 482.3 306 73.2
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.0e-133 479.6 276 80.8
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 4.8e-132 474.9 269 81.4
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 3.1e-131 472.2 308 70.8
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.7e-129 466.5 308 68.2
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 3.6e-127 458.8 268 79.1
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 7.4e-125 451.1 309 67.6
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 7.4e-125 451.1 309 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 9.1e-123 444.1 304 67.1
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 9.4e-120 434.1 338 63.3
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 7.4e-117 424.5 250 77.2
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.2e-111 407.1 304 61.2
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.3e-107 391.7 232 81.5
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.0e-102 377.5 324 55.6
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.8e-94 350.1 318 50.9
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 4.1e-91 339.0 246 65.9
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.8e-86 323.6 210 71.0
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 2.9e-84 316.2 348 44.0
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.9e-72 276.9 364 40.9
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.6e-50 204.1 123 75.6
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 3.5e-26 123.2 89 68.5
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.3e-25 120.6 82 75.6
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-20 104.8 78 67.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.0e-16 90.9 63 69.8
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.4e-11 74.7 45 73.3
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 6.1e-10 69.3 38 78.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 6.1e-10 69.3 53 66.0
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 5.1e-09 66.2 41 73.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.4e-06 57.4 38 63.2


User provided reference genes

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