Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 7.9e-87 324.7 253 100.0
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.1e-83 314.3 253 96.4
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.9e-80 303.5 253 92.9
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 3.6e-79 299.3 254 92.9
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 5.1e-78 295.4 253 90.5
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 5.1e-78 295.4 252 92.1
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 7.4e-77 291.6 249 92.8
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.2e-76 290.0 253 90.1
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.2e-76 290.0 253 90.1
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 2.8e-76 289.7 143 97.9
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 8.2e-76 288.1 143 96.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 2.9e-73 279.6 253 89.3
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 3.8e-73 279.3 253 86.2
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.2e-72 276.2 253 87.4
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 3.2e-72 276.2 251 89.6
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 5.5e-72 275.4 248 91.1
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 5.5e-72 275.4 248 91.1
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 7.2e-72 275.0 248 91.1
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 7.2e-72 275.0 248 90.7
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 9.4e-72 274.6 251 87.6
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 9.4e-72 274.6 253 86.6
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.6e-71 273.9 251 89.2
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.6e-71 273.9 248 89.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.1e-71 273.5 248 87.1
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 2.1e-71 273.5 254 87.4
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.7e-71 273.1 253 87.0
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.0e-70 271.2 254 86.2
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.0e-70 271.2 247 89.9
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.8e-70 270.4 248 89.5
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.3e-70 270.0 254 85.4
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.3e-70 270.0 254 85.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 3.0e-70 269.6 143 86.7
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.0e-70 269.6 254 85.8
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 5.1e-70 268.9 259 84.9
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 5.1e-70 268.9 255 86.3
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 5.1e-70 268.9 252 87.3
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.8e-70 268.1 259 84.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-69 267.3 253 85.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.5e-69 267.3 244 90.6
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 2.0e-69 266.9 251 86.1
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.0e-69 266.9 253 84.6
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 2.6e-69 266.5 261 84.3
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.7e-69 265.4 254 84.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 5.7e-69 265.4 244 90.6
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 7.4e-69 265.0 244 90.2
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.3e-68 264.2 254 84.6
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 1.7e-68 263.8 253 85.4
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.2e-68 263.5 248 85.9
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.7e-68 262.7 253 86.2
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.3e-68 261.9 253 85.8
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.3e-68 261.9 251 86.1
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 8.2e-68 261.5 254 83.1
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 8.2e-68 261.5 253 85.8
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 8.2e-68 261.5 253 85.8
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.1e-67 261.2 143 86.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.4e-67 260.0 253 85.0
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.4e-67 260.0 253 82.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.1e-67 259.6 253 85.0
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 3.1e-67 259.6 248 87.1
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.6e-66 257.3 253 83.0
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.0e-66 256.9 251 84.9
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.6e-66 256.5 253 83.8
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 7.7e-66 255.0 253 84.2
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.3e-65 254.2 253 84.2
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 1.3e-65 254.2 251 84.5
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 2.2e-65 253.4 143 82.5
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 83.7
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 83.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 83.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 83.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 83.7
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 2.9e-65 253.1 250 84.4
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 5.0e-65 252.3 143 81.1
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 5.0e-65 252.3 250 84.0
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.1e-64 251.1 146 80.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.9e-64 250.4 143 80.4
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.2e-64 249.2 143 81.1
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 5.5e-64 248.8 143 78.3
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 5.5e-64 248.8 248 83.9
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 79.0
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 80.4
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 4.7e-63 245.7 248 83.5
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.4e-62 244.2 143 79.0
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.0e-62 243.0 143 76.2
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 4.0e-62 242.7 143 78.3
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.0e-62 242.7 143 79.0
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 79.0
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 5.2e-62 242.3 248 81.9
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 77.6
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 77.6
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 77.6
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 76.9
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 75.5
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.2
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.2
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.2
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.2
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 75.5
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 75.5
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 9.7e-61 238.0 243 83.5
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 76.2
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 76.9
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 77.6
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 1.1e-59 234.6 143 76.2
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 7.0e-59 231.9 143 73.4
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 8.5e-49 198.4 143 61.5
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.5e-48 195.7 143 61.5
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.0e-46 191.4 253 76.7
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.2e-45 188.0 115 71.3
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 1.5e-45 187.6 143 62.9
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 7.5e-45 185.3 144 59.0
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-43 181.4 143 60.1
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 3.1e-43 179.9 139 57.6
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.2e-42 177.9 210 82.4
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.8e-39 166.8 106 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 4.7e-39 166.0 143 55.2
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.4e-35 154.5 141 56.0
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 3.2e-35 153.3 111 64.0
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.2e-34 151.4 110 64.5
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.8e-30 137.5 109 55.0
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.0e-30 136.3 131 48.9
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 6.4e-28 129.0 114 56.1
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.2e-23 114.8 143 43.4
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.5e-16 91.3 143 35.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.2e-13 81.6 134 41.0
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.7e-12 77.8 124 39.5
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 8.4e-12 75.5 142 78.2
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-10 71.2 136 80.1
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-10 71.2 35 91.4
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 1.1e-06 58.5 29 82.8
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 2.4e-06 57.4 76 40.8
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 8.9e-06 55.5 134 26.9


User provided reference genes

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