Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 0.0e+00 1119.8 571 100.0
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 4.3e-269 931.0 580 82.1
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 6.5e-225 784.3 585 73.3
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 2.0e-157 560.1 646 52.6
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.0e-140 504.6 636 50.3
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 8.2e-135 485.0 620 49.5
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 3.3e-128 463.0 643 47.3
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 1.3e-127 461.1 617 48.9
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 6.7e-121 438.7 640 45.6
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 4.4e-120 436.0 640 45.6
Psat1g195680 Pisum sativum HOM05D013241 ORTHO05D011012 5.6e-83 312.8 537 42.5
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.7e-44 184.9 411 35.0
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 1.8e-36 158.3 531 29.9
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 3.5e-29 134.0 400 30.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 4.8e-26 123.6 494 28.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 4.1e-25 120.6 409 29.3
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 7.6e-24 116.3 423 28.6
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 2.2e-23 114.8 343 32.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.7e-20 102.8 437 27.2
Lalb_Chr20g0117541 Lupinus albus HOM05D013241 ORTHO05D011012 1.5e-19 102.1 99 54.5
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.5e-19 101.3 452 27.4
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 4.3e-19 100.5 461 26.9
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.6e-18 98.6 423 27.4
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 3.7e-18 97.4 466 27.3
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 6.3e-18 96.7 442 27.6
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 1.8e-17 95.1 466 27.3
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.8e-17 95.1 460 26.7
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.9e-17 93.2 319 29.8
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.6e-16 91.3 466 26.8
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 3.4e-16 90.9 456 27.4
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 4.2e-14 84.0 317 29.0
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-12 79.0 437 25.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.1e-11 75.9 477 24.5
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 5.7e-11 73.6 503 23.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.2e-10 71.6 326 27.9
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.8e-09 68.6 554 22.4
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.8e-09 68.6 454 24.4
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 5.3e-09 67.0 447 26.4
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 9.1e-09 66.2 210 31.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 9.1e-09 66.2 446 24.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.2e-08 65.9 519 24.7
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-08 65.5 447 23.5
CARHR256170 Cardamine hirsuta HOM05D010823 ORTHO05D012736 2.0e-08 65.1 388 24.5
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 2.0e-08 65.1 448 25.7
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.6e-08 64.7 424 23.6
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.6e-08 64.7 448 23.7
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.4e-08 64.3 462 24.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.4e-08 64.3 448 23.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 5.9e-08 63.5 483 23.6
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 5.9e-08 63.5 300 26.3
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 5.9e-08 63.5 276 26.1
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.3e-07 62.4 469 23.0
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.7e-07 62.0 430 23.0
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.9e-07 61.2 422 23.0
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.8e-07 60.8 431 22.5
BraA08t32888Z Brassica rapa HOM05D010823 ORTHO05D012736 6.5e-07 60.1 438 22.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.5e-07 60.1 554 23.3
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 6.5e-07 60.1 416 25.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 8.5e-07 59.7 423 20.8
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.9e-06 58.5 423 20.8
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 3.2e-06 57.8 310 26.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.2e-06 57.8 561 23.4
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.2e-06 57.8 444 24.1


User provided reference genes

Program Settings