Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.8e-46 187.2 94 100.0
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 6.0e-35 150.6 95 80.0
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.0e-30 135.6 94 74.5
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 5.5e-28 127.5 100 71.0
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 7.9e-27 123.6 95 66.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.3e-24 116.3 94 60.6
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.8e-24 115.2 92 68.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 2.8e-24 115.2 99 65.7
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.4e-23 112.8 98 62.2
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.8e-23 112.5 99 64.6
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 2.4e-23 112.1 95 65.3
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.1e-23 111.7 99 62.6
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 3.1e-23 111.7 101 57.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 6.9e-23 110.5 101 58.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 2.0e-22 109.0 101 58.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.5e-20 102.1 102 57.8
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 3.2e-20 101.7 104 54.8
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.2e-19 99.8 98 59.2
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.7e-19 98.6 98 58.2
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 2.7e-19 98.6 96 56.2
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.8e-18 95.9 75 66.7
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 5.1e-18 94.4 97 55.7
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 5.1e-18 94.4 101 54.5
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 8.7e-18 93.6 99 56.6
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 8.7e-18 93.6 101 56.4
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.5e-17 92.8 96 57.3
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.5e-17 92.8 96 57.3
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.5e-17 92.8 99 54.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.9e-17 92.4 101 55.4
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.9e-17 92.4 101 55.4
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.5e-17 92.0 101 55.4
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.5e-17 92.0 97 54.6
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 3.3e-17 91.7 97 53.6
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.3e-17 91.3 98 58.2
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.7e-17 90.1 101 54.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 9.7e-17 90.1 92 57.6
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.8e-16 88.6 94 53.2
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 2.8e-16 88.6 97 52.6
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 2.8e-16 88.6 96 55.2
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.8e-16 88.6 95 51.6
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.7e-16 88.2 105 49.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 6.3e-16 87.4 101 54.5
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 8.2e-16 87.0 101 54.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 8.2e-16 87.0 89 52.8
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.4e-15 86.3 87 57.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 2.4e-15 85.5 101 50.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.4e-15 85.5 94 53.2
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.1e-15 85.1 107 48.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.1e-15 85.1 94 50.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.9e-15 84.0 99 55.6
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 9.0e-15 83.6 96 47.9
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.2e-14 83.2 98 49.0
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-14 82.0 95 50.5
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 3.4e-14 81.6 84 53.6
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.4e-14 81.6 98 53.1
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 3.4e-14 81.6 97 53.6
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 3.4e-14 81.6 100 52.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 5.9e-14 80.9 96 52.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.9e-14 80.9 92 51.1
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 7.7e-14 80.5 107 49.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.0e-13 80.1 100 54.0
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.0e-13 80.1 93 50.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-13 79.7 87 50.6
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.7e-13 79.3 98 52.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.7e-13 79.3 98 52.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.2e-13 79.0 96 53.1
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.9e-13 78.6 96 52.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.9e-13 78.6 91 49.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 5.0e-13 77.8 99 48.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 6.5e-13 77.4 100 51.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.9e-12 75.9 87 54.0
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.9e-12 75.9 100 52.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.9e-12 75.9 62 62.9
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.2e-12 74.7 87 50.6
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.2e-12 74.7 100 51.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 4.2e-12 74.7 99 47.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.5e-12 74.3 55 67.3
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.6e-11 72.8 103 45.6
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.6e-11 72.8 102 45.1
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.7e-11 72.0 105 44.8
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 3.6e-11 71.6 91 45.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.6e-11 71.6 54 64.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.9e-11 70.5 57 61.4
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.3e-10 68.9 98 44.9
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 3.0e-10 68.6 87 44.8
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 3.9e-10 68.2 64 56.2
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 5.1e-10 67.8 100 45.0
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 6.7e-10 67.4 100 42.0
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.5e-09 66.2 85 44.7
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 64 56.2
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 5.7e-09 64.3 51 62.7
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 5.7e-09 64.3 86 48.8
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 7.4e-09 63.9 64 54.7
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 7.4e-09 63.9 64 54.7
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 7.4e-09 63.9 95 41.1
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 9.7e-09 63.5 94 42.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 1.3e-08 63.2 98 42.9
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.3e-08 63.2 98 43.9
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-08 63.2 82 43.9
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.7e-08 62.8 87 47.1
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.7e-08 62.8 58 62.1
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.2e-08 62.4 98 42.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.2e-08 62.4 98 42.9
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.2e-08 62.4 98 42.9
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.8e-08 62.0 65 53.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.8e-08 62.0 65 53.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.8e-08 62.0 65 53.8
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 3.7e-08 61.6 99 41.4
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 3.7e-08 61.6 51 60.8
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 4.8e-08 61.2 99 39.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 8.2e-08 60.5 51 58.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 8.2e-08 60.5 98 40.8
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 8.2e-08 60.5 98 40.8
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 8.2e-08 60.5 68 51.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.8e-07 59.3 73 45.2
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.8e-07 59.3 72 44.4
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 5.3e-07 57.8 95 38.9
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 9.1e-07 57.0 101 42.6
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.2e-06 56.6 61 54.1
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.2e-06 56.6 87 48.3
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.2e-06 56.6 60 60.0
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-06 56.2 51 56.9
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-06 56.2 51 56.9
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-06 56.2 51 56.9
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 1.5e-06 56.2 87 46.0
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.5e-06 56.2 51 56.9
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 1.5e-06 56.2 87 46.0
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-06 56.2 51 56.9
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.5e-06 56.2 95 42.1
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.5e-06 56.2 85 42.4
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 2.0e-06 55.8 87 46.0
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 2.6e-06 55.5 96 40.6
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 4.5e-06 54.7 87 44.8
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 5.9e-06 54.3 89 39.3
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 7.7e-06 53.9 97 36.1


User provided reference genes

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