Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 5.1e-66 254.2 125 100.0
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 7.2e-44 180.6 100 92.0
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 7.8e-30 134.0 102 71.6
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 2.6e-25 119.0 103 60.2
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 3.9e-21 105.1 102 57.8
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 5.4e-15 84.7 89 55.1
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.2e-14 83.6 83 54.2
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.3e-13 80.1 85 60.0
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 1.7e-13 79.7 89 52.8
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 1.7e-13 79.7 61 62.3
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 3.9e-13 78.6 42 78.6
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 5.1e-13 78.2 61 55.7
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 5.1e-13 78.2 91 51.6
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 5.1e-13 78.2 84 48.8
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.1e-12 77.0 61 59.0
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 3.3e-12 75.5 51 64.7
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 1.2e-11 73.6 86 46.5
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 1.6e-11 73.2 92 52.2
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 2.8e-11 72.4 88 48.9
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 3.6e-11 72.0 57 52.6
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 4.7e-11 71.6 88 50.0
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 6.2e-11 71.2 88 48.9
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 6.2e-11 71.2 88 47.7
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 1.8e-10 69.7 106 50.0
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 2.3e-10 69.3 49 63.3
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 3.1e-10 68.9 95 46.3
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 5.2e-10 68.2 99 40.4
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 5.2e-10 68.2 51 60.8
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 6.8e-10 67.8 77 46.8
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 8.9e-10 67.4 99 41.4
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 1.2e-09 67.0 86 43.0
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 1.2e-09 67.0 94 47.9
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.0e-09 66.2 82 43.9
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 2.6e-09 65.9 51 56.9
TPR.G20480 Trifolium pratense HOM05D007852 ORTHO05D009916 4.4e-09 65.1 94 45.7
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 5.8e-09 64.7 66 51.5
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 5.8e-09 64.7 65 47.7
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 7.5e-09 64.3 58 50.0
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 9.9e-09 63.9 82 40.2
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 9.9e-09 63.9 51 54.9
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 1.7e-08 63.2 92 43.5
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 1.7e-08 63.2 92 43.5
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 1.7e-08 63.2 95 42.1
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 2.2e-08 62.8 58 53.4
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 2.9e-08 62.4 98 41.8
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 2.9e-08 62.4 58 46.6
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 3.7e-08 62.0 90 46.7
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 6.4e-08 61.2 57 49.1
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 8.3e-08 60.8 57 49.1
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 8.3e-08 60.8 42 57.1
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 1.4e-07 60.1 50 52.0
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 1.9e-07 59.7 101 40.6
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 2.4e-07 59.3 60 48.3
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 3.2e-07 58.9 75 41.3
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 4.1e-07 58.5 60 48.3
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 4.1e-07 58.5 60 50.0
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 5.4e-07 58.2 51 54.9
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 7.1e-07 57.8 49 44.9
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 9.2e-07 57.4 60 50.0
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 1.6e-06 56.6 100 40.0
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 1.6e-06 56.6 85 42.4
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 2.1e-06 56.2 46 56.5
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 2.1e-06 56.2 59 45.8
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 2.7e-06 55.8 81 42.0
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 3.5e-06 55.5 52 51.9
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 3.5e-06 55.5 60 48.3
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 3.5e-06 55.5 40 55.0
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 4.6e-06 55.1 46 54.3
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 4.6e-06 55.1 96 41.7
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 7.8e-06 54.3 90 38.9
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 7.8e-06 54.3 90 38.9
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 7.8e-06 54.3 90 38.9
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 7.8e-06 54.3 96 41.7


User provided reference genes

Program Settings