Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 8.9e-116 420.2 205 100.0
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 4.6e-112 407.9 205 96.6
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 2.9e-106 388.7 205 90.2
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 8.3e-106 387.1 205 88.8
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 2.7e-104 382.1 205 87.3
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 1.0e-103 380.2 203 87.7
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 1.7e-103 379.4 205 86.3
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 3.0e-103 378.6 203 87.2
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 3.0e-103 378.6 205 86.3
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 3.9e-103 378.3 205 85.9
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 3.9e-103 378.3 205 86.3
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 8.6e-103 377.1 203 86.2
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 8.6e-103 377.1 205 86.3
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 8.6e-103 377.1 205 86.3
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 1.1e-102 376.7 205 85.9
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 2.5e-102 375.6 205 85.9
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 5.6e-102 374.4 205 85.9
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 7.3e-102 374.0 205 84.9
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 1.6e-101 372.9 205 84.4
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 1.6e-101 372.9 205 85.4
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 2.1e-101 372.5 205 85.4
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 4.7e-101 371.3 205 85.9
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 1.1e-100 370.2 205 83.9
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 5.2e-100 367.9 205 84.4
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 6.8e-100 367.5 205 84.4
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 8.9e-100 367.1 205 83.4
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 2.0e-99 365.9 205 83.4
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 2.0e-99 365.9 205 84.9
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.0e-99 365.9 205 84.9
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.6e-99 365.5 205 84.9
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.6e-99 365.5 205 84.9
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 2.6e-99 365.5 205 84.4
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 4.4e-99 364.8 204 82.4
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 5.8e-99 364.4 205 84.9
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 9.9e-99 363.6 205 82.0
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 1.7e-98 362.8 205 82.0
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 3.8e-98 361.7 205 82.0
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 6.4e-98 360.9 205 82.9
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 8.4e-98 360.5 205 82.0
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 1.1e-97 360.1 205 81.5
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 3.2e-97 358.6 205 81.5
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 3.2e-97 358.6 205 82.4
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 3.2e-97 358.6 205 80.5
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 4.1e-97 358.2 205 81.5
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 4.1e-97 358.2 205 81.5
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 5.4e-97 357.8 205 81.0
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 7.1e-97 357.5 205 81.0
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 9.2e-97 357.1 205 81.0
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 9.2e-97 357.1 205 81.0
Manes.16G078200 Manihot esculenta HOM05D006661 ORTHO05D008369 1.6e-96 356.3 195 85.1
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 2.7e-96 355.5 205 80.5
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 2.7e-96 355.5 205 80.0
unitig_748.g7518 Utricularia gibba HOM05D006661 ORTHO05D008369 2.7e-96 355.5 203 81.8
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 3.5e-96 355.1 205 81.0
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.0e-95 353.6 205 79.5
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 1.0e-95 353.6 205 80.0
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 1.3e-95 353.2 205 80.0
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 2.3e-95 352.4 205 80.0
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 2.3e-95 352.4 205 78.5
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 3.9e-95 351.7 203 79.3
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 3.9e-95 351.7 205 78.5
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 3.9e-95 351.7 205 79.0
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 5.1e-95 351.3 205 79.0
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 6.6e-95 350.9 205 79.0
AUR62022048 Chenopodium quinoa HOM05D006661 ORTHO05D008369 8.6e-95 350.5 203 78.3
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 8.6e-95 350.5 205 79.0
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 1.5e-94 349.7 205 79.0
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 1.5e-94 349.7 205 79.0
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 4.3e-94 348.2 205 78.0
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 4.3e-94 348.2 191 84.3
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 4.3e-94 348.2 205 78.5
Haze_18212 Corylus avellana HOM05D006661 ORTHO05D008369 5.6e-94 347.8 191 85.3
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 9.6e-94 347.1 205 78.0
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 1.6e-93 346.3 205 80.0
Cpa.g.sc7.195 Carica papaya HOM05D006661 ORTHO05D008369 4.7e-93 344.7 191 84.8
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 1.4e-92 343.2 205 77.1
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 1.8e-92 342.8 205 76.1
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 3.1e-92 342.0 205 75.6
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 8.9e-92 340.5 203 79.3
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 5.8e-91 337.8 191 82.2
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 7.6e-91 337.4 191 82.2
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 7.6e-91 337.4 191 82.2
vmacro00160 Vaccinium macrocarpon HOM05D006661 ORTHO05D008369 6.4e-90 334.3 191 80.1
PSO832G3146 Papaver somniferum HOM05D006661 ORTHO05D008369 1.9e-89 332.8 203 76.4
ATR0789G168 Amborella trichopoda HOM05D006661 ORTHO05D008369 4.6e-88 328.2 203 73.9
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 3.3e-86 322.0 205 74.1
DCAR_003069 Daucus carota HOM05D006661 ORTHO05D008369 4.3e-86 321.6 189 77.8
HPP92_005507 Vanilla planifolia HOM05D006661 ORTHO05D008369 1.3e-85 320.1 205 71.7
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.6e-80 303.1 205 70.2
MELO3C030341.2 Cucumis melo HOM05D006661 ORTHO05D008369 6.0e-80 301.2 264 59.8
AUR62009178 Chenopodium quinoa HOM05D006661 ORTHO05D008369 1.5e-78 296.6 175 77.7
EL10Ac2g03924 Beta vulgaris HOM05D006661 ORTHO05D008369 6.9e-76 287.7 211 65.9
Lj8A552G6 Lonicera japonica HOM05D006661 ORTHO05D008369 5.8e-75 284.6 163 82.8
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 3.8e-74 282.0 166 79.5
SMO169G0297 Selaginella moellendorffii HOM05D006661 ORTHO05D008369 5.6e-70 268.1 190 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 3.7e-69 265.4 197 62.4
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 6.2e-69 264.6 196 63.8
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.4e-68 263.5 214 64.0
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 9.0e-68 260.8 196 61.2
FAN27G1843 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.3e-63 246.9 168 76.2
Sc23g0005520 Simmondsia chinensis HOM05D006661 ORTHO05D008369 1.3e-61 240.4 134 83.6
Sabra06G0180500 Salix brachista HOM05D006661 ORTHO05D008369 4.1e-60 235.3 134 81.3
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 7.2e-57 224.6 131 78.6
CANSAT78G0664 Cannabis sativa HOM05D006661 ORTHO05D008369 1.3e-53 213.8 119 85.7
SEGI_00170 Sequoiadendron giganteum HOM05D006661 ORTHO05D008369 3.2e-49 199.1 131 68.7
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 1.1e-46 190.7 110 79.1
Sabra06G0180400 Salix brachista HOM05D006661 ORTHO05D008369 1.4e-41 173.7 97 82.5
CANSAT25G1095 Cannabis sativa HOM05D006661 ORTHO05D008369 3.2e-41 172.6 96 83.3
MD08G1045300 Malus domestica HOM05D006661 ORTHO05D008369 6.1e-40 168.3 97 81.4
Cre02.g110450 Chlamydomonas reinhardtii HOM05D006661 ORTHO05D008369 5.3e-36 155.2 193 40.4
QL02p001525 Quercus lobata HOM05D006661 ORTHO05D008369 1.6e-35 153.7 95 73.7
PRCOL_00000611 Prasinoderma coloniale HOM05D006661 ORTHO05D008369 4.0e-31 139.0 193 37.3
MCO14G523 Micromonas commoda HOM05D006661 ORTHO05D008369 6.7e-31 138.3 134 46.3
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 6.3e-21 105.1 185 34.1
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 5.0e-18 95.5 218 30.3
COL.COLO4_21031 Corchorus olitorius HOM05D006661 ORTHO05D008369 6.8e-15 85.1 44 88.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 5.7e-14 82.0 45 86.7
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 5.7e-14 82.0 45 86.7
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 5.7e-14 82.0 45 86.7
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 2.2e-13 80.1 45 84.4
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 1.5e-09 67.4 158 30.4
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 5.6e-09 65.5 158 32.3
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 9.5e-09 64.7 161 30.4
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.6e-08 63.9 158 32.9
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.1e-08 63.5 158 30.4
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 2.1e-08 63.5 158 30.4
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 2.1e-08 63.5 153 29.4
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 6.1e-08 62.0 158 29.7
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 8.0e-08 61.6 158 28.5
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 8.0e-08 61.6 158 31.0
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 8.0e-08 61.6 157 29.3
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.0e-07 61.2 158 29.1
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 1.0e-07 61.2 157 29.3
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 1.0e-07 61.2 159 28.3
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 1.0e-07 61.2 157 28.7
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 1.8e-07 60.5 152 28.9
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.3e-07 60.1 158 28.5
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 2.3e-07 60.1 162 30.2
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.3e-07 60.1 153 30.7
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 2.3e-07 60.1 157 29.3
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 2.3e-07 60.1 161 32.3
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 2.3e-07 60.1 161 30.4
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.3e-07 60.1 158 29.1
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 2.3e-07 60.1 158 30.4
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 3.0e-07 59.7 149 28.2
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 3.0e-07 59.7 153 30.1
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 3.0e-07 59.7 157 28.7
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 3.0e-07 59.7 137 32.8
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 3.0e-07 59.7 157 28.7
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 4.0e-07 59.3 161 30.4
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 4.0e-07 59.3 146 32.2
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 29.3
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 5.2e-07 58.9 161 29.8
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 5.2e-07 58.9 157 28.7
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 5.2e-07 58.9 161 31.1
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 5.2e-07 58.9 158 31.6
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 5.2e-07 58.9 158 30.4
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 5.2e-07 58.9 161 29.8
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 6.8e-07 58.5 153 30.1
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 6.8e-07 58.5 158 28.5
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 8.9e-07 58.2 158 29.7
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 8.9e-07 58.2 158 30.4
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 8.9e-07 58.2 161 29.8
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 8.9e-07 58.2 158 29.1
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 1.2e-06 57.8 157 28.7
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 1.2e-06 57.8 158 29.7
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 1.2e-06 57.8 157 29.9
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.2e-06 57.8 153 30.1
Prupe.1G326300 Prunus persica HOM05D006661 ORTHO05D008369 1.2e-06 57.8 42 64.3
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 1.5e-06 57.4 157 28.7
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 2.0e-06 57.0 161 29.8
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 2.0e-06 57.0 157 28.7
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 2.6e-06 56.6 149 29.5
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 2.6e-06 56.6 158 29.7
Nitab4.5_0004055g0120 Nicotiana tabacum HOM05D006661 ORTHO05D008369 2.6e-06 56.6 66 39.4
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 2.6e-06 56.6 158 31.6
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 2.6e-06 56.6 132 29.5
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 3.4e-06 56.2 157 29.9
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 4.4e-06 55.8 133 31.6
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 5.7e-06 55.5 161 29.8
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 5.7e-06 55.5 157 28.0
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 7.5e-06 55.1 161 29.2


User provided reference genes

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