Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G168136 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 3.0e-119 431.8 210 100.0
VMungo0540G2150 Vigna mungo HOM05D007799 ORTHO05D009854 3.1e-100 368.6 194 92.8
Glyma.15G090500 Glycine max HOM05D007799 ORTHO05D009854 2.2e-93 345.9 194 88.7
Glyma.13G221700 Glycine max HOM05D007799 ORTHO05D009854 4.9e-93 344.7 194 88.1
Lj6g0006831 Lotus japonicus HOM05D007799 ORTHO05D009854 7.5e-78 294.3 194 75.3
Medtr2g018670 Medicago truncatula HOM05D007799 ORTHO05D009854 1.1e-76 290.4 195 75.4
TPR.G26257 Trifolium pratense HOM05D007799 ORTHO05D009854 1.1e-76 290.4 185 78.4
Ca_00511_v3 Cicer arietinum L. HOM05D007799 ORTHO05D009854 7.1e-76 287.7 185 76.8
Lalb_Chr20g0117681 Lupinus albus HOM05D007799 ORTHO05D009854 1.9e-73 279.6 206 69.9
Psat1g192080 Pisum sativum HOM05D007799 ORTHO05D009854 1.6e-72 276.6 195 72.3
Glyma.05G143400 Glycine max HOM05D007799 ORTHO05D009854 1.4e-71 273.5 192 67.7
arahy.Tifrunner.gnm1.ann1.80ML42 Arachis hypogaea HOM05D007799 ORTHO05D009854 6.8e-71 271.2 192 69.3
arahy.Tifrunner.gnm1.ann1.NZ6SRJ Arachis hypogaea HOM05D007799 ORTHO05D009854 1.5e-70 270.0 192 69.3
Glyma.08G099800 Glycine max HOM05D007799 ORTHO05D009854 7.5e-70 267.7 186 68.3
Lalb_Chr15g0086631 Lupinus albus HOM05D007799 ORTHO05D009854 2.9e-69 265.8 190 70.5
VMungo0251G0945 Vigna mungo HOM05D007799 ORTHO05D009854 7.8e-67 257.7 185 65.9
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 2.1e-64 249.6 195 64.6
TPR.G9572 Trifolium pratense HOM05D007799 ORTHO05D009854 2.8e-64 249.2 188 65.4
Phvul.002G177900 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 8.1e-64 247.7 187 62.6
Medtr8g079475 Medicago truncatula HOM05D007799 ORTHO05D009854 1.8e-63 246.5 199 63.3
arahy.Tifrunner.gnm1.ann1.W0WEAA Arachis hypogaea HOM05D007799 ORTHO05D009854 2.4e-63 246.1 195 63.6
Lalb_Chr13g0294011 Lupinus albus HOM05D007799 ORTHO05D009854 8.9e-63 244.2 194 63.4
QL05p055084 Quercus lobata HOM05D007799 ORTHO05D009854 7.8e-59 231.1 195 59.0
Manes.15G125000 Manihot esculenta HOM05D007799 ORTHO05D009854 1.7e-58 229.9 191 58.1
Duzib192G0648 Durio zibethinus HOM05D007799 ORTHO05D009854 1.9e-57 226.5 191 56.5
Eucgr.D00266 Eucalyptus grandis HOM05D007799 ORTHO05D009854 1.9e-57 226.5 195 56.4
Cfa000897 Carpinus fangiana HOM05D007799 ORTHO05D009854 3.1e-55 219.2 191 53.4
CiPaw.09G119600 Carya illinoinensis HOM05D007799 ORTHO05D009854 6.9e-55 218.0 197 55.8
Duzib235G1165 Durio zibethinus HOM05D007799 ORTHO05D009854 6.9e-55 218.0 184 56.0
Actinidia32344 Actinidia chinensis HOM05D007799 ORTHO05D009854 2.0e-54 216.5 194 55.7
Thecc.06G144300 Theobroma cacao HOM05D007799 ORTHO05D009854 4.4e-54 215.3 191 53.4
Atru.chr10.1081 Acer truncatum HOM05D007799 ORTHO05D009854 6.4e-53 211.5 162 61.1
Prupe.4G085700 Prunus persica HOM05D007799 ORTHO05D009854 2.4e-52 209.5 180 57.2
CiPaw.10G088800 Carya illinoinensis HOM05D007799 ORTHO05D009854 3.2e-52 209.1 198 53.5
Dinv32213 Davidia involucrata HOM05D007799 ORTHO05D009854 4.2e-52 208.8 184 58.7
MD10G1258100 Malus domestica HOM05D007799 ORTHO05D009854 9.3e-52 207.6 195 52.3
RcHm_v2.0_Chr5g0014941 Rosa chinensis HOM05D007799 ORTHO05D009854 1.6e-51 206.8 180 55.0
COL.COLO4_31009 Corchorus olitorius HOM05D007799 ORTHO05D009854 7.8e-51 204.5 170 58.2
MD05G1279400 Malus domestica HOM05D007799 ORTHO05D009854 2.3e-50 203.0 195 52.3
GSVIVG01021549001 Vitis vinifera HOM05D007799 ORTHO05D009854 2.3e-50 203.0 192 51.6
Ciclev10016395m.g Citrus clementina HOM05D007799 ORTHO05D009854 1.1e-49 200.7 189 52.4
CANSAT35G1982 Cannabis sativa HOM05D007799 ORTHO05D009854 1.6e-48 196.8 201 52.7
FAN16G3425 Fragaria x ananassa HOM05D007799 ORTHO05D009854 2.8e-48 196.1 197 50.8
FvH4_3g05030 Fragaria vesca HOM05D007799 ORTHO05D009854 3.6e-48 195.7 197 50.8
Cc00_g02020 Coffea canephora HOM05D007799 ORTHO05D009854 4.8e-48 195.3 185 51.9
FAN11G0145 Fragaria x ananassa HOM05D007799 ORTHO05D009854 8.1e-48 194.5 197 50.3
CSS0034958 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 1.8e-47 193.4 172 55.8
FAN25G3832 Fragaria x ananassa HOM05D007799 ORTHO05D009854 1.8e-47 193.4 197 50.3
MBI18_g11218_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 1.8e-47 193.4 188 47.3
Haze_05684 Corylus avellana HOM05D007799 ORTHO05D009854 4.0e-47 192.2 172 52.3
CSS0035706 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 5.3e-47 191.8 172 55.2
FAN21G3556 Fragaria x ananassa HOM05D007799 ORTHO05D009854 9.0e-47 191.0 197 49.7
Rhsim13G0117700 Rhododendron simsii HOM05D007799 ORTHO05D009854 5.8e-46 188.3 168 54.2
MBI02_g12199_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 9.9e-46 187.6 180 47.2
Potri.011G081701 Populus trichocarpa HOM05D007799 ORTHO05D009854 1.3e-45 187.2 170 55.3
PGR083G2472 Punica granatum HOM05D007799 ORTHO05D009854 2.9e-45 186.0 169 54.4
PGSC0003DMG400002292 Solanum tuberosum HOM05D007799 ORTHO05D009854 2.9e-45 186.0 193 46.6
Oeu032721.1 Olea europaea HOM05D007799 ORTHO05D009854 1.1e-44 184.1 167 53.3
Gohir.A06G196000 Gossypium hirsutum HOM05D007799 ORTHO05D009854 7.1e-44 181.4 162 56.2
Gorai.010G237400 Gossypium raimondii HOM05D007799 ORTHO05D009854 9.3e-44 181.0 162 56.2
vmacro03431 Vaccinium macrocarpon HOM05D007799 ORTHO05D009854 9.3e-44 181.0 187 49.7
Peaxi162Scf00045g02414 Petunia axillaris HOM05D007799 ORTHO05D009854 2.1e-43 179.9 186 50.5
Nitab4.5_0005655g0010 Nicotiana tabacum HOM05D007799 ORTHO05D009854 6.0e-43 178.3 196 46.4
SalBow8G4130 Salvia bowleyana HOM05D007799 ORTHO05D009854 3.9e-42 175.6 173 46.8
Gohir.D06G203500 Gossypium hirsutum HOM05D007799 ORTHO05D009854 6.7e-42 174.9 157 55.4
CsaV3_1G036880 Cucumis sativus L. HOM05D007799 ORTHO05D009854 1.9e-41 173.3 203 44.8
ClCG03G006490 Citrullus lanatus HOM05D007799 ORTHO05D009854 7.4e-41 171.4 165 52.7
Migut.K01168 Erythranthe guttata HOM05D007799 ORTHO05D009854 9.6e-41 171.0 156 51.9
DCAR_003890 Daucus carota HOM05D007799 ORTHO05D009854 1.1e-39 167.5 199 45.7
Oeu031191.1 Olea europaea HOM05D007799 ORTHO05D009854 1.8e-39 166.8 164 51.2
Nn3g20329 Nelumbo nucifera HOM05D007799 ORTHO05D009854 6.9e-39 164.9 153 51.0
ECA236G2997 Erigeron canadensis HOM05D007799 ORTHO05D009854 2.6e-38 162.9 197 43.1
Lsat_1_v5_gn_7_27461 Lactuca sativa HOM05D007799 ORTHO05D009854 1.3e-37 160.6 186 45.7
HPP92_026553 Vanilla planifolia HOM05D007799 ORTHO05D009854 2.9e-37 159.5 176 40.9
HanXRQChr15g0482011 Helianthus annuus HOM05D007799 ORTHO05D009854 8.4e-37 157.9 183 44.3
Nitab4.5_0000315g0030 Nicotiana tabacum HOM05D007799 ORTHO05D009854 4.2e-36 155.6 160 48.1
Sed0012400 Sechium edule HOM05D007799 ORTHO05D009854 4.2e-36 155.6 163 50.3
Sopen08g008720 Solanum pennellii HOM05D007799 ORTHO05D009854 2.3e-34 149.8 154 46.1
Solyc08g023510.3 Solanum lycopersicum HOM05D007799 ORTHO05D009854 2.5e-33 146.4 146 45.9
HanXRQChr04g0116571 Helianthus annuus HOM05D007799 ORTHO05D009854 3.3e-33 146.0 183 42.6
CDE12G0863 Ceratophyllum demersum HOM05D007799 ORTHO05D009854 3.7e-32 142.5 168 41.1
ATR1098G006 Amborella trichopoda HOM05D007799 ORTHO05D009854 2.0e-30 136.7 170 36.5
HPP92_028169 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.0e-29 134.4 174 36.8
DCAR_007872 Daucus carota HOM05D007799 ORTHO05D009854 1.7e-29 133.7 183 42.6
TAR624G0778 Trochodendron aralioides HOM05D007799 ORTHO05D009854 1.6e-24 117.1 104 55.8
HPP92_026526 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.9e-20 103.6 103 43.7
MELO3C035703.2 Cucumis melo HOM05D007799 ORTHO05D009854 5.7e-17 92.0 94 50.0
SEGI_29226 Sequoiadendron giganteum HOM05D007799 ORTHO05D009854 8.2e-16 88.2 166 30.7
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 4.4e-09 65.9 62 50.0


User provided reference genes

Program Settings