Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 5.6e-249 864.0 494 100.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 7.9e-211 737.3 475 80.2
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.1e-207 724.9 497 75.7
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.3e-202 709.1 498 77.1
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 3.1e-183 645.6 502 68.5
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.7e-176 623.2 389 78.9
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 4.2e-172 608.6 500 65.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.8e-171 605.9 537 61.8
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.2e-170 601.7 389 76.9
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 5.2e-170 601.7 505 63.2
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 8.0e-163 577.8 521 61.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.6e-161 572.8 513 61.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 2.4e-151 539.7 352 76.7
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.1e-142 510.0 386 66.1
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 4.6e-142 508.8 487 56.9
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 3.9e-141 505.8 392 66.6
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.1e-139 500.0 526 53.4
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 6.2e-139 498.4 392 65.3
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.4e-138 497.3 389 62.7
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 6.8e-138 495.0 394 64.7
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 2.0e-137 493.4 523 53.2
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.6e-137 493.0 497 54.5
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 5.8e-137 491.9 389 62.7
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.9e-137 491.1 382 65.2
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.3e-136 490.7 388 62.4
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.2e-136 490.0 497 54.7
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.8e-136 489.2 391 62.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 3.8e-136 489.2 384 63.5
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 2.4e-135 486.5 497 54.3
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.6e-134 483.8 497 54.3
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.6e-134 483.8 390 62.6
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.7e-134 483.0 543 51.4
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 3.5e-134 482.6 392 63.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.5e-134 482.6 382 63.1
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 7.8e-134 481.5 384 63.0
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.0e-133 481.1 389 62.7
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.3e-133 479.9 533 50.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.6e-133 478.4 389 60.7
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 6.6e-133 478.4 390 62.6
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.5e-132 477.2 392 62.0
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.5e-132 476.5 389 59.9
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 3.3e-132 476.1 390 61.0
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.6e-132 475.3 389 60.2
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 9.6e-132 474.6 407 60.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 9.6e-132 474.6 522 50.6
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.6e-131 473.8 530 48.5
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.6e-131 473.8 530 48.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 6.2e-131 471.9 404 60.4
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.4e-130 470.7 392 62.0
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.8e-130 470.3 390 62.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.2e-129 467.6 393 61.6
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 1.5e-129 467.2 392 60.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 9.9e-129 464.5 392 60.2
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.7e-128 463.8 394 61.7
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 5.4e-127 458.8 393 60.8
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 9.3e-127 458.0 393 60.6
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.7e-126 456.4 389 59.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.0e-125 454.5 392 59.7
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.5e-124 450.7 392 60.7
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.5e-124 449.9 392 59.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.8e-123 446.4 393 58.8
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.8e-123 445.7 391 58.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 6.2e-123 445.3 392 59.2
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.8e-122 443.7 391 58.6
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-121 440.7 493 53.5
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.5e-121 440.7 388 59.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 5.8e-121 438.7 536 46.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 9.9e-121 438.0 427 53.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 5.4e-119 432.2 324 71.3
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.1e-117 425.6 514 49.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.1e-116 424.5 514 48.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.9e-116 423.7 387 56.6
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.3e-115 421.0 358 62.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.6e-115 420.6 388 57.7
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 3.7e-115 419.5 387 57.4
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.7e-115 419.5 387 57.4
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 3.7e-115 419.5 388 57.5
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 8.1e-115 418.3 388 57.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.1e-114 417.9 387 57.1
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.4e-114 417.5 388 56.2
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.4e-114 416.8 391 56.0
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 5.3e-114 415.6 387 56.6
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 6.9e-114 415.2 387 56.8
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.5e-113 414.1 387 56.6
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 4.5e-113 412.5 514 47.7
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.2e-112 410.2 390 55.4
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.1e-111 407.9 510 46.3
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.1e-110 403.7 540 45.4
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.5e-110 402.9 388 52.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.8e-109 400.6 400 52.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.9e-109 399.4 530 44.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.6e-108 395.6 392 55.4
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.4e-106 390.2 400 53.0
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.3e-106 389.0 392 53.8
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.1e-98 363.2 368 51.9
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 9.0e-98 361.7 391 50.9
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 5.5e-87 325.9 392 45.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.1e-86 323.9 217 72.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 2.4e-82 310.5 407 43.0
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.1e-78 297.4 408 43.4
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 6.1e-78 295.8 407 41.3
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.9e-72 276.9 281 54.4
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.8e-72 276.6 233 62.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.4e-69 268.1 396 38.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 7.5e-68 262.3 279 52.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.8e-66 257.7 401 40.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.2e-65 255.0 234 56.4
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.0e-64 251.9 398 38.9
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.7e-62 243.8 234 53.0
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 4.7e-62 243.0 265 50.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.1e-58 229.9 234 50.9
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.0e-56 225.3 233 51.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.3e-56 224.2 277 48.0
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.3e-55 220.3 419 37.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.5e-55 219.5 262 50.4
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.8e-53 212.6 160 67.5
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.5e-52 209.1 166 63.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.4e-50 204.1 119 85.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 5.6e-47 193.0 155 64.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.4e-43 179.5 196 49.0
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 6.4e-43 179.5 145 68.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.2e-41 175.3 196 49.5
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-39 168.7 159 56.0
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.2e-37 159.8 122 66.4
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.3e-29 134.4 195 41.5
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.7e-27 128.3 102 69.6
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.4e-21 108.6 102 52.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.7e-19 101.7 136 47.1
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 7.3e-15 86.3 91 53.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 7.3e-15 86.3 91 53.8
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.8e-13 81.6 98 46.9
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 8.7e-08 62.8 94 40.4
Medtr0199s0030 Medicago truncatula HOM05D005606 ORTHO05D006446 3.6e-06 57.4 50 56.0
Medtr8g007575 Medicago truncatula HOM05D005606 ORTHO05D006446 3.6e-06 57.4 55 60.0


User provided reference genes

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