Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.9e-159 565.8 301 100.0
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 7.6e-132 474.2 299 85.3
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 4.8e-126 454.9 299 80.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.9e-122 443.0 301 80.1
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 3.2e-98 362.5 301 66.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 2.6e-95 352.8 302 65.9
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 3.3e-95 352.4 297 64.6
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 9.7e-95 350.9 300 66.0
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 3.7e-94 349.0 300 65.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.1e-93 347.4 298 66.4
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.4e-93 347.1 299 63.9
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.5e-90 336.3 296 63.2
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.1e-77 292.4 301 56.8
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 5.4e-77 292.0 301 56.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.5e-71 273.9 301 52.5
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 9.8e-71 271.2 296 54.1
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 5.4e-69 265.4 303 50.5
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 9.2e-69 264.6 311 51.4
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.5e-66 257.3 296 51.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.5e-66 256.5 296 51.4
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 2.1e-65 253.4 301 49.2
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 8.0e-65 251.5 302 51.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.4e-64 250.8 296 51.7
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.8e-64 250.4 302 48.7
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 3.0e-64 249.6 301 48.8
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.0e-63 246.9 303 49.5
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 2.6e-63 246.5 300 48.7
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.6e-63 246.5 297 49.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.8e-63 245.4 305 49.2
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 9.8e-63 244.6 300 48.0
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 4.9e-62 242.3 301 48.2
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.4e-61 240.7 305 49.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.4e-61 240.0 297 46.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 4.1e-61 239.2 309 46.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 7.0e-61 238.4 308 46.4
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-60 236.9 291 52.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.0e-60 236.9 305 49.2
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 6.0e-60 235.3 292 51.4
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 6.0e-60 235.3 309 46.6
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.0e-59 234.6 305 49.5
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.3e-59 234.2 305 49.5
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.3e-59 234.2 296 48.0
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-59 233.8 305 49.5
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.3e-59 233.4 305 49.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.1e-58 231.1 306 44.4
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.1e-58 231.1 302 46.7
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.9e-58 230.3 308 44.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.3e-58 229.2 305 48.9
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.1e-57 226.9 303 45.2
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.6e-57 226.1 301 45.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 6.2e-57 225.3 299 47.2
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 8.0e-57 224.9 307 44.3
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 1.1e-56 224.6 308 44.2
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.8e-56 223.8 310 43.2
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.8e-56 223.8 310 44.5
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.3e-56 223.4 293 46.4
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 5.2e-56 222.2 305 46.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 5.2e-56 222.2 303 45.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 6.8e-56 221.9 307 44.3
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 6.8e-56 221.9 307 44.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.2e-55 221.1 307 44.0
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.5e-55 220.7 301 45.2
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.5e-55 220.7 301 45.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 4.4e-55 219.2 329 42.2
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 5.8e-55 218.8 305 44.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.5e-55 218.4 290 45.2
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.7e-54 217.2 307 46.3
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.9e-54 216.5 312 41.3
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.9e-54 216.5 280 45.7
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.7e-54 216.1 301 44.9
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.9e-53 213.8 315 42.2
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.2e-53 213.0 284 46.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 5.4e-53 212.2 317 42.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.4e-53 212.2 304 43.1
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 7.0e-53 211.8 301 43.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 7.0e-53 211.8 305 44.3
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 9.2e-53 211.5 299 44.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-52 211.1 303 43.2
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 6.0e-52 208.8 312 43.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 6.0e-52 208.8 264 47.0
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.8e-52 208.4 303 43.6
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.3e-51 207.6 301 43.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.7e-51 207.2 296 44.9
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.7e-51 207.2 302 42.4
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.7e-51 207.2 297 44.4
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 5.1e-51 205.7 310 43.9
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.1e-50 204.5 298 42.6
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 2.5e-50 203.4 299 43.8
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 4.3e-50 202.6 307 44.0
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.5e-50 201.4 306 42.8
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.8e-49 199.9 254 48.8
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 3.6e-49 199.5 277 45.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 8.1e-49 198.4 318 43.1
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.1e-48 198.0 307 42.7
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.4e-48 197.6 284 41.2
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-48 197.2 310 42.9
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 2.3e-48 196.8 303 42.9
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 8.9e-48 194.9 306 42.5
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 7.5e-47 191.8 281 43.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 9.9e-47 191.4 264 43.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.7e-46 190.7 321 39.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.7e-46 190.7 321 39.3
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.7e-46 190.7 280 42.9
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.9e-46 189.9 288 42.4
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.7e-46 189.5 303 40.3
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 4.1e-45 186.0 283 38.9
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.4e-45 185.7 289 39.4
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 7.1e-45 185.3 286 40.2
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 9.2e-45 184.9 310 41.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 9.2e-45 184.9 294 39.8
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.1e-44 183.7 299 41.5
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 2.1e-44 183.7 299 42.1
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.1e-44 183.7 271 43.9
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.9e-42 177.2 299 40.8
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 7.3e-42 175.3 200 54.0
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-40 171.4 244 43.4
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.4e-40 171.0 264 42.8
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 6.0e-36 155.6 287 36.9
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 7.8e-36 155.2 313 37.4
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.7e-28 130.2 157 47.1
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.4e-24 117.9 221 35.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.5e-23 114.4 146 48.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 4.5e-23 112.8 259 32.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.5e-18 97.1 174 39.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.8e-14 83.2 186 33.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 2.1e-12 77.4 120 42.5
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 5.6e-10 69.3 90 47.8
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 1.3e-06 58.2 84 40.5


User provided reference genes

Program Settings