Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 5.1e-134 481.1 245 100.0
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.6e-85 319.3 167 94.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 3.2e-80 302.4 228 71.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.3e-78 296.2 168 88.7
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.2e-72 275.8 168 81.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 9.4e-72 274.2 170 82.4
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.7e-71 272.7 168 79.2
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.6e-69 266.2 170 80.6
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.8e-68 261.9 166 80.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.4e-67 260.4 168 76.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.8e-67 260.0 166 76.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.1e-67 258.8 165 77.0
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 9.1e-67 257.7 164 79.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.2e-66 257.3 166 78.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 2.0e-66 256.5 170 77.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.7e-66 254.6 165 75.2
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.0e-65 254.2 166 75.9
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.7e-65 253.4 165 75.8
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.5e-64 250.4 166 74.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.5e-64 249.6 166 75.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.5e-64 249.6 167 73.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.2e-64 248.1 168 73.2
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.6e-63 245.7 166 74.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.7e-63 245.4 168 73.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 6.1e-63 245.0 168 75.6
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.0e-62 244.2 163 73.6
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.4e-62 243.8 166 72.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 4.4e-61 238.8 166 72.9
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 9.8e-61 237.7 167 71.3
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.7e-60 236.9 165 72.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-60 236.5 166 72.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 4.8e-60 235.3 165 72.1
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.4e-59 233.8 166 71.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-59 233.4 166 71.7
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.4e-59 233.0 167 68.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.0e-57 227.6 163 68.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.3e-57 227.3 163 68.7
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.9e-57 226.1 162 71.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.9e-57 226.1 163 67.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.8e-57 225.7 164 69.5
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 6.5e-57 224.9 162 71.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.1e-56 224.2 158 73.4
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-56 224.2 166 66.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-56 224.2 163 67.5
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-56 223.4 166 66.3
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 4.2e-56 222.2 163 67.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.2e-56 221.5 159 68.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.2e-55 220.7 164 69.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.6e-55 220.3 166 66.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.8e-55 219.5 166 65.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.8e-55 219.5 165 66.1
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.6e-55 219.2 169 66.9
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 6.1e-55 218.4 166 68.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 6.1e-55 218.4 166 67.5
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.0e-55 218.0 164 65.9
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 8.0e-55 218.0 177 66.1
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.4e-54 217.2 165 66.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.0e-54 216.1 168 67.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 4.0e-54 215.7 166 67.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.0e-54 215.7 164 68.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.0e-54 215.7 168 67.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.0e-54 215.7 168 66.7
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 8.8e-54 214.5 168 63.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.5e-53 213.8 165 64.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.6e-53 213.0 153 68.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 4.4e-53 212.2 168 63.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 5.7e-53 211.8 163 68.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.7e-53 211.8 163 68.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.7e-53 211.8 163 68.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 7.5e-53 211.5 164 64.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.3e-52 210.7 163 68.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.7e-52 210.3 165 63.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-52 210.3 166 65.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.8e-52 209.5 162 67.3
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.9e-52 208.8 163 67.5
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.4e-51 207.2 159 67.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.4e-51 207.2 167 62.9
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.4e-51 207.2 166 64.5
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-51 206.5 167 63.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.1e-51 206.1 160 64.4
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.1e-51 206.1 167 65.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 4.1e-51 205.7 165 67.3
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.1e-51 205.7 166 62.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 7.0e-51 204.9 164 68.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 7.0e-51 204.9 167 63.5
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 7.0e-51 204.9 167 63.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 7.0e-51 204.9 164 62.8
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 9.2e-51 204.5 167 64.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-50 204.1 167 64.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-50 204.1 167 63.5
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-50 204.1 166 62.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.6e-50 203.8 168 61.9
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.6e-50 203.8 157 65.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.0e-50 203.4 168 60.7
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.5e-50 202.6 167 62.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.9e-50 201.8 166 65.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.3e-49 200.7 170 59.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.7e-49 200.3 163 66.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.8e-49 199.1 165 60.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.8e-49 199.1 168 60.7
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.5e-48 197.2 166 64.5
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.6e-47 193.7 166 60.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.4e-46 190.7 162 59.3
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.3e-46 189.9 168 59.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 8.9e-46 188.0 131 70.2
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.5e-45 187.2 158 60.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 9.8e-45 184.5 166 57.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.8e-43 180.3 169 58.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.8e-43 180.3 169 58.6
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.2e-43 179.5 169 59.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.1e-43 179.1 165 60.6
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 4.1e-43 179.1 133 68.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.9e-42 175.3 125 69.6
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 3.3e-40 169.5 165 57.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.6e-39 166.0 127 70.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.4e-38 164.1 135 63.0
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 4.0e-38 162.5 166 54.8
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.4e-37 159.5 147 58.5
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.4e-36 155.2 167 54.5
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-35 153.7 167 54.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.4e-35 153.3 124 60.5
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-35 152.9 165 50.9
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-35 152.5 112 66.1
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.1e-35 152.5 167 53.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 5.4e-35 152.1 133 60.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.6e-33 144.8 174 50.0
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.9e-32 143.7 97 67.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.9e-32 143.7 125 60.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.5e-32 143.3 161 45.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.1e-31 138.3 119 59.7
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.1e-30 137.9 131 50.4
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.2e-29 134.4 125 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.9e-28 129.0 158 44.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.4e-28 128.6 156 44.9
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 7.1e-27 125.2 170 47.1
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-26 124.4 155 48.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-25 120.9 88 69.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.3e-25 120.2 135 45.2
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-25 120.2 73 78.1
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.8e-23 113.2 125 43.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.4e-22 110.9 78 71.8
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.8e-22 108.6 120 41.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.4e-20 101.7 163 42.3
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.1e-19 101.3 65 80.0
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-18 97.8 144 41.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.6e-17 92.0 61 75.4
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 8.7e-17 91.7 73 56.2
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.5e-16 90.9 87 57.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.1e-15 87.0 80 56.2
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.2e-15 85.5 64 65.6
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.4e-14 84.3 87 44.8
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.0e-14 82.8 81 55.6
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.2e-14 82.4 61 65.6
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 6.9e-14 82.0 62 66.1
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-13 81.3 57 68.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-13 81.3 57 68.4
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.4e-13 79.3 53 71.7
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 9.9e-13 78.2 122 34.4
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 4.6e-10 69.3 115 37.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.3e-09 67.8 60 58.3
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.5e-08 63.5 60 46.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.3e-08 62.8 89 48.3
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 5.6e-08 62.4 120 38.3
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 7.3e-08 62.0 80 37.5
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 6.9e-06 55.5 102 31.4


User provided reference genes

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